Variant report

Variant	rs10185403
Chromosome Location	chr2:11206343-11206344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10164900	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10174308	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10205830	0.86[EUR][1000 genomes]
rs10221871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10439232	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10495579	1.00[YRI][hapmap]
rs11675414	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11678376	1.00[YRI][hapmap]
rs11679968	0.83[EUR][1000 genomes]
rs12994083	0.88[EUR][1000 genomes]
rs13016104	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13032732	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13399692	1.00[YRI][hapmap]
rs34481886	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71439044	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv527179	chr2:11204654-11208294	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv519160	chr2:11205359-11208294	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11205600-11206400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:11205600-11206400	Enhancers	Fetal Lung	lung
3	chr2:11205600-11206600	Enhancers	Colonic Mucosa	Colon
4	chr2:11205600-11206600	Enhancers	Fetal Intestine Small	intestine
5	chr2:11205600-11206600	Enhancers	Fetal Stomach	stomach
6	chr2:11205600-11206600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr2:11205800-11206600	Enhancers	Pancreas	Pancrea
8	chr2:11205800-11206800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr2:11206000-11206600	Enhancers	Fetal Intestine Large	intestine
10	chr2:11206200-11206400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr2:11206200-11206600	Bivalent Enhancer	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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