Variant report

Variant	rs10174308
Chromosome Location	chr2:11192591-11192592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10164900	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10185403	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10202414	0.87[AFR][1000 genomes]
rs10205830	0.88[EUR][1000 genomes]
rs10221871	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10439232	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11675414	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11679968	0.84[EUR][1000 genomes]
rs12994083	0.89[EUR][1000 genomes]
rs13007440	0.87[AFR][1000 genomes]
rs13016104	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13032732	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34481886	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71439044	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11191000-11196800	Weak transcription	Fetal Brain Female	brain
2	chr2:11191400-11194200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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