Variant report

Variant	rs10205830
Chromosome Location	chr2:11167534-11167535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10174308	0.88[EUR][1000 genomes]
rs10185403	0.86[EUR][1000 genomes]
rs10205917	0.92[AFR][1000 genomes]
rs10221871	0.86[EUR][1000 genomes]
rs11675414	0.80[EUR][1000 genomes]
rs11679968	0.96[EUR][1000 genomes]
rs12994083	0.98[EUR][1000 genomes]
rs13016104	0.81[EUR][1000 genomes]
rs13032732	0.81[EUR][1000 genomes]
rs34481886	0.98[EUR][1000 genomes]
rs71439044	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11161800-11168600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11163000-11168800	Weak transcription	Right Atrium	heart
3	chr2:11164800-11171200	Weak transcription	Pancreas	Pancrea
4	chr2:11165000-11170000	Weak transcription	Fetal Lung	lung
5	chr2:11166200-11167600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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