Variant report

Variant	rs13022267
Chromosome Location	chr2:178855882-178855883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178852131..178854988-chr2:178855154..178857922,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10168170	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10171247	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186953	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189134	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197329	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200643	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207459	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211057	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221806	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497477	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497478	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693123	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12693127	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693151	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989778	1.00[AFR][1000 genomes]
rs12993389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002398	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003047	1.00[ASN][1000 genomes]
rs13010993	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013319	1.00[ASN][1000 genomes]
rs13017026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017462	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017473	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13019623	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021204	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034432	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388218	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389574	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392577	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393722	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13395159	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402629	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402636	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405585	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406131	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408518	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408911	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415041	0.96[EUR][1000 genomes]
rs13422706	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423344	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426862	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429445	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330012	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330172	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401293	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401951	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402102	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34018298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34081471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206020	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34363929	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34434094	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473720	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34479958	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34510795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528505	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596457	0.90[EUR][1000 genomes]
rs34767203	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34927879	1.00[AFR][1000 genomes]
rs34948302	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233809	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35454650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35591668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35699369	0.84[EUR][1000 genomes]
rs35757742	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35797524	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35924394	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952531	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738614	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71423523	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423534	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423539	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423545	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71423555	1.00[AFR][1000 genomes]
rs7575322	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989802	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv583712	chr2:178843950-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv521228	chr2:178845469-178856900	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv583718	chr2:178845469-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv583731	chr2:178845755-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv583736	chr2:178851177-178857169	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3459894	chr2:178855083-178857438	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3459893	chr2:178855363-178857297	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3459895	chr2:178855363-178857297	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178854600-178861400	Weak transcription	A549	lung
2	chr2:178854800-178861400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:178854800-178862400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:178855000-178861200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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