Variant report

Variant	rs71423523
Chromosome Location	chr2:178817868-178817869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178817015..178819167-chr2:178824979..178826962,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC30A-1	chr2:178817838-178818008	ENSG00000236664.1

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10168170	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10168605	0.82[AFR][1000 genomes]
rs10170290	0.82[AFR][1000 genomes]
rs10171247	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181377	0.82[AFR][1000 genomes]
rs10182833	0.82[AFR][1000 genomes]
rs10183144	0.82[AFR][1000 genomes]
rs10186239	0.82[AFR][1000 genomes]
rs10186953	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189134	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192990	0.82[AFR][1000 genomes]
rs10193299	0.82[AFR][1000 genomes]
rs10195497	0.82[AFR][1000 genomes]
rs10197329	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198681	0.82[AFR][1000 genomes]
rs10198877	0.82[AFR][1000 genomes]
rs10200643	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207459	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211057	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221806	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497478	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693123	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12693127	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693133	0.82[AFR][1000 genomes]
rs12693145	0.82[AFR][1000 genomes]
rs12693151	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993389	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995449	0.82[AFR][1000 genomes]
rs13002398	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003047	1.00[ASN][1000 genomes]
rs13010993	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013319	1.00[ASN][1000 genomes]
rs13017026	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017462	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017473	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13019623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021204	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022267	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023049	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023495	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023939	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026481	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027582	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028692	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034432	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388218	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389574	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392577	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393722	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13395159	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402629	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402636	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405585	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406131	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408518	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410185	0.82[AFR][1000 genomes]
rs13415041	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13422706	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423344	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426862	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427912	0.82[AFR][1000 genomes]
rs13428032	0.82[AFR][1000 genomes]
rs13429445	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17329742	0.82[AFR][1000 genomes]
rs17330012	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330172	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330290	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330381	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401293	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401650	0.82[AFR][1000 genomes]
rs17401671	0.82[AFR][1000 genomes]
rs17401951	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402102	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635803	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635875	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635934	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635957	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687170	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687217	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056715	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34018298	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34081471	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206020	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234621	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34363929	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406776	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34434094	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473720	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34479958	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34510795	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528505	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596457	0.94[EUR][1000 genomes]
rs34767203	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34948302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233809	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35267683	0.82[AFR][1000 genomes]
rs35286879	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290022	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35385829	0.82[AFR][1000 genomes]
rs35454650	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35591668	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35625771	0.85[AFR][1000 genomes]
rs35699369	0.88[EUR][1000 genomes]
rs35757742	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35758079	0.82[AFR][1000 genomes]
rs35797524	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35924394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952531	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738614	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71423515	0.82[AFR][1000 genomes]
rs71423518	0.82[AFR][1000 genomes]
rs71423519	0.82[AFR][1000 genomes]
rs71423534	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423535	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423537	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423538	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423539	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423540	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423541	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423545	1.00[ASN][1000 genomes]
rs7575322	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288011	0.82[AFR][1000 genomes]
rs9989802	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv3055	chr2:178800438-178819638	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2762296	chr2:178812726-178818029	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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