Variant report

Variant	rs13423344
Chromosome Location	chr2:178716029-178716030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10168170	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10171247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186953	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197329	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200643	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207459	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211057	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497477	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497478	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693123	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12693127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693151	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993389	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002398	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003047	1.00[ASN][1000 genomes]
rs13010993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013319	1.00[ASN][1000 genomes]
rs13017026	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017462	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017473	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13019623	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021204	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022267	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023049	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023495	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026481	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027582	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028692	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034432	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389574	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392577	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393722	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13395159	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402629	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402636	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405585	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406131	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408518	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408911	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415041	0.96[EUR][1000 genomes]
rs13422706	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426862	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330012	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330172	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330290	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401951	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402102	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635803	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635875	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635934	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635957	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687170	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687217	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056715	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34018298	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34081471	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34206020	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234621	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34363929	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406776	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34434094	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473720	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34479958	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34510795	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528505	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596457	0.98[EUR][1000 genomes]
rs34767203	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34948302	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233809	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286879	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290022	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35454650	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35591668	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35699369	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35757742	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35797524	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35924394	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952531	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738614	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71423523	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423534	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423535	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423537	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423538	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423539	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423540	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423541	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423545	1.00[ASN][1000 genomes]
rs7575322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178699800-178716600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:178714000-178716400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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