Variant report

Variant	rs13026927
Chromosome Location	chr2:209769277-209769278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10167720	0.84[EUR][1000 genomes]
rs10178837	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10186320	0.92[EUR][1000 genomes]
rs10192840	0.92[EUR][1000 genomes]
rs10497912	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10497913	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10497914	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10497915	0.93[EUR][1000 genomes]
rs10497916	0.93[EUR][1000 genomes]
rs10497917	0.93[EUR][1000 genomes]
rs1107012	0.93[EUR][1000 genomes]
rs11884061	0.92[EUR][1000 genomes]
rs11884074	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12464172	0.93[EUR][1000 genomes]
rs12991020	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13007238	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13018777	0.87[EUR][1000 genomes]
rs13019486	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13021774	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13022155	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13024347	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13025032	0.85[EUR][1000 genomes]
rs13025499	0.85[EUR][1000 genomes]
rs13029761	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13411078	0.92[EUR][1000 genomes]
rs1357247	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1357248	0.92[EUR][1000 genomes]
rs1402996	0.88[EUR][1000 genomes]
rs1402999	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1522201	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1522202	0.91[EUR][1000 genomes]
rs16842022	0.93[EUR][1000 genomes]
rs16842024	0.93[EUR][1000 genomes]
rs16842028	0.93[EUR][1000 genomes]
rs16842029	0.93[EUR][1000 genomes]
rs16842030	0.93[EUR][1000 genomes]
rs16842036	0.93[EUR][1000 genomes]
rs16842052	0.93[EUR][1000 genomes]
rs16842053	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16842199	0.87[EUR][1000 genomes]
rs16842268	0.82[EUR][1000 genomes]
rs16842299	0.81[EUR][1000 genomes]
rs1818784	0.92[EUR][1000 genomes]
rs1829708	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1851368	0.93[EUR][1000 genomes]
rs1949689	0.84[EUR][1000 genomes]
rs1969381	0.83[EUR][1000 genomes]
rs2364697	0.92[EUR][1000 genomes]
rs2886146	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2886148	0.92[EUR][1000 genomes]
rs34227926	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34326398	0.89[EUR][1000 genomes]
rs34578232	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34988180	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35179183	0.93[EUR][1000 genomes]
rs35245441	0.93[EUR][1000 genomes]
rs35251783	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs3851939	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851940	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3851941	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs3863854	0.92[EUR][1000 genomes]
rs3914935	0.92[EUR][1000 genomes]
rs3914937	0.93[EUR][1000 genomes]
rs4109419	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4366838	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4485688	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5002645	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56335750	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58821250	0.81[EUR][1000 genomes]
rs66515766	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6717179	0.88[EUR][1000 genomes]
rs71409838	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72989312	0.90[EUR][1000 genomes]
rs73064322	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7559978	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7580198	0.92[EUR][1000 genomes]
rs7588985	0.82[EUR][1000 genomes]
rs7599045	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7606381	0.92[EUR][1000 genomes]
rs883049	0.88[EUR][1000 genomes]
rs939848	0.88[EUR][1000 genomes]
rs9646841	0.82[EUR][1000 genomes]
rs9989816	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875758	chr2:209676037-209784089	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875759	chr2:209692190-209784089	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460058	chr2:209755059-209866395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv584306	chr2:209755059-209866395	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3487576	chr2:209768379-209947296	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3487577	chr2:209768379-209947296	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209767600-209770200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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