Variant report

Variant	rs3851939
Chromosome Location	chr2:209757798-209757799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10167720	0.91[EUR][1000 genomes]
rs10178837	0.98[EUR][1000 genomes]
rs10186320	0.99[EUR][1000 genomes]
rs10192840	0.99[EUR][1000 genomes]
rs10497912	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10497913	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10497914	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10497915	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10497916	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10497917	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1107012	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11884061	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11884074	0.99[EUR][1000 genomes]
rs12464172	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12991020	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13007238	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13018777	0.93[EUR][1000 genomes]
rs13019486	0.99[EUR][1000 genomes]
rs13021774	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13022155	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13024347	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13025032	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13025499	0.92[EUR][1000 genomes]
rs13026927	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13029761	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13411078	0.99[EUR][1000 genomes]
rs1357247	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1357248	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1402996	0.94[EUR][1000 genomes]
rs1402999	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1522201	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1522202	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16842022	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842024	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16842028	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842029	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842030	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842036	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842052	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842053	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842199	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16842268	0.89[EUR][1000 genomes]
rs16842299	0.87[EUR][1000 genomes]
rs1818784	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1829708	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1851368	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1949689	0.91[EUR][1000 genomes]
rs1969381	0.90[EUR][1000 genomes]
rs2364697	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2886146	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2886148	0.99[EUR][1000 genomes]
rs34227926	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34326398	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34578232	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34988180	0.84[ASN][1000 genomes]
rs35179183	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35245441	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35251783	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3851940	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3851941	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3863854	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3914935	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3914937	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4109419	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4298021	0.83[AMR][1000 genomes]
rs4366838	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4485688	0.84[ASN][1000 genomes]
rs5002645	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56335750	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58821250	0.87[EUR][1000 genomes]
rs66515766	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6717179	0.94[EUR][1000 genomes]
rs71409838	0.99[EUR][1000 genomes]
rs72989312	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73064322	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7559978	0.98[EUR][1000 genomes]
rs7580198	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7588985	0.89[EUR][1000 genomes]
rs7599045	0.99[EUR][1000 genomes]
rs7606381	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs883049	0.94[EUR][1000 genomes]
rs939848	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9646841	0.88[EUR][1000 genomes]
rs9989816	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875758	chr2:209676037-209784089	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875759	chr2:209692190-209784089	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460058	chr2:209755059-209866395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv584306	chr2:209755059-209866395	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209757200-209758200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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