Variant report

Variant	rs58821250
Chromosome Location	chr2:209913465-209913466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209911421..209913579-chr2:209913671..209915928,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10167720	0.95[EUR][1000 genomes]
rs10178837	0.86[EUR][1000 genomes]
rs10186320	0.87[EUR][1000 genomes]
rs10192840	0.87[EUR][1000 genomes]
rs10497912	0.86[EUR][1000 genomes]
rs10497913	0.87[EUR][1000 genomes]
rs10497914	0.87[EUR][1000 genomes]
rs10497915	0.87[EUR][1000 genomes]
rs10497916	0.87[EUR][1000 genomes]
rs10497917	0.87[EUR][1000 genomes]
rs1107012	0.87[EUR][1000 genomes]
rs11884061	0.87[EUR][1000 genomes]
rs11884074	0.87[EUR][1000 genomes]
rs12464172	0.87[EUR][1000 genomes]
rs12991020	0.87[EUR][1000 genomes]
rs13007238	0.86[EUR][1000 genomes]
rs13018777	0.83[EUR][1000 genomes]
rs13019486	0.87[EUR][1000 genomes]
rs13021774	0.85[EUR][1000 genomes]
rs13022155	0.87[EUR][1000 genomes]
rs13024347	0.87[EUR][1000 genomes]
rs13025032	0.88[EUR][1000 genomes]
rs13025499	0.95[EUR][1000 genomes]
rs13026927	0.81[EUR][1000 genomes]
rs13029761	0.87[EUR][1000 genomes]
rs13411078	0.87[EUR][1000 genomes]
rs1357247	0.87[EUR][1000 genomes]
rs1357248	0.87[EUR][1000 genomes]
rs1402996	0.92[EUR][1000 genomes]
rs1402999	0.87[EUR][1000 genomes]
rs1522201	0.87[EUR][1000 genomes]
rs1522202	0.86[EUR][1000 genomes]
rs16842022	0.87[EUR][1000 genomes]
rs16842024	0.87[EUR][1000 genomes]
rs16842028	0.87[EUR][1000 genomes]
rs16842029	0.87[EUR][1000 genomes]
rs16842030	0.87[EUR][1000 genomes]
rs16842036	0.87[EUR][1000 genomes]
rs16842052	0.87[EUR][1000 genomes]
rs16842053	0.87[EUR][1000 genomes]
rs16842199	0.89[EUR][1000 genomes]
rs16842268	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16842299	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1818784	0.87[EUR][1000 genomes]
rs1829708	0.86[EUR][1000 genomes]
rs1851368	0.87[EUR][1000 genomes]
rs1949689	0.94[EUR][1000 genomes]
rs1969381	0.92[EUR][1000 genomes]
rs2364697	0.87[EUR][1000 genomes]
rs2886146	0.87[EUR][1000 genomes]
rs2886148	0.87[EUR][1000 genomes]
rs34227926	0.87[EUR][1000 genomes]
rs34326398	0.92[EUR][1000 genomes]
rs34578232	0.87[EUR][1000 genomes]
rs35179183	0.87[EUR][1000 genomes]
rs35245441	0.87[EUR][1000 genomes]
rs35251783	0.87[EUR][1000 genomes]
rs3851939	0.87[EUR][1000 genomes]
rs3851940	0.87[EUR][1000 genomes]
rs3851941	0.87[EUR][1000 genomes]
rs3863854	0.87[EUR][1000 genomes]
rs3914935	0.86[EUR][1000 genomes]
rs3914937	0.87[EUR][1000 genomes]
rs4109419	0.87[EUR][1000 genomes]
rs4366838	0.87[EUR][1000 genomes]
rs5002645	0.87[EUR][1000 genomes]
rs56335750	0.87[EUR][1000 genomes]
rs66515766	0.87[EUR][1000 genomes]
rs6717179	0.92[EUR][1000 genomes]
rs71409838	0.87[EUR][1000 genomes]
rs72989312	0.83[EUR][1000 genomes]
rs73064322	0.87[EUR][1000 genomes]
rs7559978	0.86[EUR][1000 genomes]
rs7580198	0.87[EUR][1000 genomes]
rs7588985	0.93[EUR][1000 genomes]
rs7599045	0.87[EUR][1000 genomes]
rs7606381	0.87[EUR][1000 genomes]
rs883049	0.92[EUR][1000 genomes]
rs939848	0.90[EUR][1000 genomes]
rs9646841	0.97[EUR][1000 genomes]
rs9989816	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3487576	chr2:209768379-209947296	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3487577	chr2:209768379-209947296	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1009924	chr2:209805661-210042572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv875760	chr2:209817526-209929978	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1002578	chr2:209836205-210026339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv536132	chr2:209836205-210026339	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209912800-209916200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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