Variant report

Variant	rs13027965
Chromosome Location	chr2:142268315-142268316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:142267758..142272921-chr2:142273064..142275767,4	MCF-7	breast:
2	chr2:142223533..142226548-chr2:142266133..142269163,3	MCF-7	breast:
3	chr2:142267530..142270120-chr2:142367084..142369508,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13001145	0.84[JPT][hapmap]
rs13023092	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384661	0.84[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs1384662	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1384665	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1483137	0.84[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs1483139	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1483140	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1483146	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1483147	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs17613870	0.84[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs17616445	1.00[CEU][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2009574	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs34519660	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35187841	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35889742	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4284765	0.84[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4456644	0.84[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4591293	0.81[CEU][hapmap]
rs4605311	0.80[CEU][hapmap]
rs4611596	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs4625846	0.90[ASN][1000 genomes]
rs5026929	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs56146396	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6429912	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap]
rs6725403	0.87[ASN][1000 genomes]
rs6743480	0.87[EUR][1000 genomes]
rs6747911	0.81[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs713263	0.84[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs72485545	0.83[ASN][1000 genomes]
rs72849004	0.86[ASN][1000 genomes]
rs72849005	0.85[ASN][1000 genomes]
rs72849042	0.86[ASN][1000 genomes]
rs72851319	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764820	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs979080	0.94[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142266600-142268800	Weak transcription	Brain Inferior Temporal Lobe	brain

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