Variant report

Variant	rs4284765
Chromosome Location	chr2:142248552-142248553
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142248367..142251172-chr2:142262537..142266743,4	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs13001145	0.89[JPT][hapmap]
rs13023092	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13027965	0.84[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1384661	0.94[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs1384662	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1384665	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1483137	0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap]
rs1483139	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483140	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483146	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483147	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483155	0.84[JPT][hapmap]
rs17613870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17616445	0.84[CEU][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2009574	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs34519660	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35187841	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35889742	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4335888	0.81[JPT][hapmap]
rs4371296	0.83[CHB][hapmap]
rs4371297	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4416160	0.81[JPT][hapmap]
rs4446018	0.81[JPT][hapmap]
rs4446019	0.80[JPT][hapmap]
rs4456644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4531869	0.81[JPT][hapmap]
rs4574058	0.83[EUR][1000 genomes]
rs4605311	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4611596	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap]
rs4625846	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5012231	0.81[JPT][hapmap]
rs5026929	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs56146396	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6429886	0.81[JPT][hapmap]
rs6429912	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs6718919	0.84[JPT][hapmap]
rs6719026	0.81[JPT][hapmap]
rs6725403	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6733981	0.81[JPT][hapmap]
rs6747911	0.94[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs713263	0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs72485545	0.91[ASN][1000 genomes]
rs72849004	0.94[ASN][1000 genomes]
rs72849005	0.93[ASN][1000 genomes]
rs72849042	0.94[ASN][1000 genomes]
rs72849079	0.85[ASN][1000 genomes]
rs72849648	0.85[EUR][1000 genomes]
rs72851319	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs764820	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs979080	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875234	chr2:142156180-142254119	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv875243	chr2:142219033-142259592	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459607	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv583207	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv459618	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv583209	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142239400-142256400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:142247400-142249600	Enhancers	Brain Angular Gyrus	brain
3	chr2:142247400-142249600	Enhancers	Brain Substantia Nigra	brain
4	chr2:142247800-142249400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:142247800-142249600	Enhancers	Brain Hippocampus Middle	brain
6	chr2:142247800-142266200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:142248000-142249600	Enhancers	Brain Cingulate Gyrus	brain
8	chr2:142248200-142250000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:142248200-142250200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links