Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10178963	0.84[JPT][hapmap]
rs10203978	0.94[JPT][hapmap]
rs13001145	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13009820	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384661	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1384662	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1384665	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs1483137	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1483139	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1483140	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1483146	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1483147	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs17613870	0.84[JPT][hapmap]
rs17616445	0.84[JPT][hapmap]
rs2009574	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4284765	0.84[JPT][hapmap]
rs4410229	0.91[ASN][1000 genomes]
rs4456644	0.84[JPT][hapmap]
rs4611596	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs5026929	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6429912	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs6747911	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs713263	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs764820	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs900473	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979080	0.84[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142359400-142367200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:142360400-142366800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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