Variant report

Variant	rs17613870
Chromosome Location	chr2:142235081-142235082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13001145	0.89[JPT][hapmap]
rs13023092	0.90[ASN][1000 genomes]
rs13027965	0.84[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs1384661	0.94[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs1384662	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1384665	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1483137	0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1483139	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483140	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483146	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483147	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483155	0.84[JPT][hapmap]
rs17616445	0.84[CEU][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2009574	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs34519660	0.81[ASN][1000 genomes]
rs35187841	0.96[ASN][1000 genomes]
rs35889742	0.81[ASN][1000 genomes]
rs4284765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335888	0.81[JPT][hapmap]
rs4371296	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs4371297	0.96[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs4416160	0.81[JPT][hapmap]
rs4446018	0.81[JPT][hapmap]
rs4446019	0.80[JPT][hapmap]
rs4456644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4531869	0.81[JPT][hapmap]
rs4605311	0.96[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs4611596	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4622654	0.91[MEX][hapmap]
rs4625846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012231	0.81[JPT][hapmap]
rs5026929	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs56146396	0.81[ASN][1000 genomes]
rs58627041	0.84[EUR][1000 genomes]
rs59001301	0.85[EUR][1000 genomes]
rs62168040	0.85[EUR][1000 genomes]
rs6429886	0.81[JPT][hapmap]
rs6429912	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6718919	0.84[JPT][hapmap]
rs6719026	0.81[JPT][hapmap]
rs6725403	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6733981	0.81[JPT][hapmap]
rs6747911	0.94[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs713263	0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs72485545	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72849004	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72849005	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72849042	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72849079	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72851319	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs764820	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs979080	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759095	chr2:142071391-142245947	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875234	chr2:142156180-142254119	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875236	chr2:142158967-142239599	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1002208	chr2:142167237-142235308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv522093	chr2:142172366-142242597	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv875237	chr2:142172366-142242597	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv875238	chr2:142180831-142242597	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv34606	chr2:142181268-142239268	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3693425	chr2:142184803-142239599	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv1004494	chr2:142185449-142240487	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv34823	chr2:142187268-142239268	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv875239	chr2:142195346-142239599	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv2756949	chr2:142196123-142245947	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	nsv875241	chr2:142210946-142239599	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv875242	chr2:142216767-142242597	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv875243	chr2:142219033-142259592	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv459607	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv583207	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142227000-142238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:142229200-142239000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142231400-142236600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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