Variant report

Variant	rs13032463
Chromosome Location	chr2:186570610-186570611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10170781	0.90[EUR][1000 genomes]
rs10177147	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10180581	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10202023	0.97[EUR][1000 genomes]
rs11675192	0.86[EUR][1000 genomes]
rs11678064	0.95[EUR][1000 genomes]
rs11681517	0.89[EUR][1000 genomes]
rs11683123	0.89[EUR][1000 genomes]
rs11686018	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11686062	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11690475	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11691687	0.94[EUR][1000 genomes]
rs11691944	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11695761	0.94[EUR][1000 genomes]
rs12693416	0.88[EUR][1000 genomes]
rs12991386	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12991410	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12991698	0.91[EUR][1000 genomes]
rs12998684	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13002265	0.89[EUR][1000 genomes]
rs13007661	0.89[EUR][1000 genomes]
rs13011116	0.89[EUR][1000 genomes]
rs13012137	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13015041	0.89[EUR][1000 genomes]
rs13030170	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13030807	0.93[EUR][1000 genomes]
rs13033801	0.90[EUR][1000 genomes]
rs13393583	0.97[EUR][1000 genomes]
rs13429390	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13432887	0.91[EUR][1000 genomes]
rs17206943	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17230036	0.91[EUR][1000 genomes]
rs17230101	0.91[EUR][1000 genomes]
rs2287607	0.90[EUR][1000 genomes]
rs34000575	0.95[EUR][1000 genomes]
rs34093449	0.95[EUR][1000 genomes]
rs34113655	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34152682	0.89[EUR][1000 genomes]
rs34191961	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34221764	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34338290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34420134	0.85[EUR][1000 genomes]
rs34449658	0.95[EUR][1000 genomes]
rs34571837	0.89[EUR][1000 genomes]
rs34626145	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34631835	0.91[EUR][1000 genomes]
rs34654071	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34661485	0.89[EUR][1000 genomes]
rs34877204	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34879834	0.95[EUR][1000 genomes]
rs35047001	0.83[EUR][1000 genomes]
rs35062319	0.95[EUR][1000 genomes]
rs35110878	0.91[EUR][1000 genomes]
rs35165452	0.95[EUR][1000 genomes]
rs35201815	0.89[EUR][1000 genomes]
rs35207414	0.89[EUR][1000 genomes]
rs35267530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35289321	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35320505	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35537030	0.95[EUR][1000 genomes]
rs35638932	0.95[EUR][1000 genomes]
rs35639419	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35781787	0.95[EUR][1000 genomes]
rs35847686	0.95[EUR][1000 genomes]
rs36012390	0.89[EUR][1000 genomes]
rs36065595	0.89[EUR][1000 genomes]
rs3752671	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs61459829	0.83[EUR][1000 genomes]
rs66508949	0.95[EUR][1000 genomes]
rs67035495	0.88[EUR][1000 genomes]
rs6708098	0.87[EUR][1000 genomes]
rs6739732	0.89[EUR][1000 genomes]
rs67629903	0.88[EUR][1000 genomes]
rs67784166	0.89[EUR][1000 genomes]
rs71432404	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71432408	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72896456	0.89[EUR][1000 genomes]
rs7556993	0.95[EUR][1000 genomes]
rs7565527	0.90[EUR][1000 genomes]
rs7584519	0.97[EUR][1000 genomes]
rs7599251	0.95[EUR][1000 genomes]
rs9789468	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875540	chr2:186345148-186583961	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875541	chr2:186345148-186598526	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv584018	chr2:186352959-186598526	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1007052	chr2:186441382-186864390	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv584019	chr2:186445393-186866874	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009118	chr2:186450293-186864390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2763034	chr2:186473461-186587890	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1008230	chr2:186474069-186818718	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv536076	chr2:186474069-186818718	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv584020	chr2:186475590-186661567	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv584021	chr2:186475590-186866841	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1011628	chr2:186523096-186594343	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1003484	chr2:186524793-186591557	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1003603	chr2:186524793-186594343	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2751838	chr2:186531835-186591557	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv584022	chr2:186531835-186591557	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv1010456	chr2:186531835-186594343	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv3414312	chr2:186564235-186579049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186565600-186603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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