Variant report

Variant	rs35289321
Chromosome Location	chr2:186473429-186473430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:186473268..186473794-chr2:186603435..186603983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226747	Chromatin interaction
ENSG00000188738	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10170781	0.85[EUR][1000 genomes]
rs10177147	0.85[EUR][1000 genomes]
rs10180581	0.85[EUR][1000 genomes]
rs10202023	0.93[EUR][1000 genomes]
rs11675192	0.91[EUR][1000 genomes]
rs11675629	0.90[EUR][1000 genomes]
rs11676655	0.88[EUR][1000 genomes]
rs11678064	0.90[EUR][1000 genomes]
rs11681517	0.94[EUR][1000 genomes]
rs11681870	0.90[EUR][1000 genomes]
rs11683123	0.94[EUR][1000 genomes]
rs11686018	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11686062	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11686861	0.90[EUR][1000 genomes]
rs11690475	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11691490	0.90[EUR][1000 genomes]
rs11691615	0.90[EUR][1000 genomes]
rs11691687	0.99[EUR][1000 genomes]
rs11691944	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11693233	0.88[EUR][1000 genomes]
rs11695761	0.99[EUR][1000 genomes]
rs12693416	0.83[EUR][1000 genomes]
rs12988744	0.90[EUR][1000 genomes]
rs12991386	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12991410	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12991698	0.86[EUR][1000 genomes]
rs12998684	0.86[EUR][1000 genomes]
rs13002265	0.94[EUR][1000 genomes]
rs13007661	0.94[EUR][1000 genomes]
rs13011116	0.94[EUR][1000 genomes]
rs13012137	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13014616	0.88[EUR][1000 genomes]
rs13015041	0.94[EUR][1000 genomes]
rs13030170	0.85[EUR][1000 genomes]
rs13030807	0.98[EUR][1000 genomes]
rs13032463	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13033801	0.85[EUR][1000 genomes]
rs13393583	0.93[EUR][1000 genomes]
rs13429390	0.85[EUR][1000 genomes]
rs13432887	0.86[EUR][1000 genomes]
rs17206943	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17230036	0.86[EUR][1000 genomes]
rs17230101	0.86[EUR][1000 genomes]
rs2287607	0.85[EUR][1000 genomes]
rs34000575	1.00[EUR][1000 genomes]
rs34087779	0.90[EUR][1000 genomes]
rs34093449	1.00[EUR][1000 genomes]
rs34113655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34152682	0.94[EUR][1000 genomes]
rs34191961	1.00[EUR][1000 genomes]
rs34221764	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34338290	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34420134	0.90[EUR][1000 genomes]
rs34449658	1.00[EUR][1000 genomes]
rs34537855	0.90[EUR][1000 genomes]
rs34571837	0.94[EUR][1000 genomes]
rs34626145	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34631835	0.86[EUR][1000 genomes]
rs34654071	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34661485	0.94[EUR][1000 genomes]
rs34826735	0.90[EUR][1000 genomes]
rs34877204	0.99[EUR][1000 genomes]
rs34879834	1.00[EUR][1000 genomes]
rs34969380	0.89[EUR][1000 genomes]
rs35047001	0.88[EUR][1000 genomes]
rs35062319	1.00[EUR][1000 genomes]
rs35066265	0.90[EUR][1000 genomes]
rs35110878	0.96[EUR][1000 genomes]
rs35165452	1.00[EUR][1000 genomes]
rs35201815	0.94[EUR][1000 genomes]
rs35207414	0.94[EUR][1000 genomes]
rs35267530	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35320505	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35537030	1.00[EUR][1000 genomes]
rs35638932	1.00[EUR][1000 genomes]
rs35639419	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35781787	1.00[EUR][1000 genomes]
rs35815004	0.88[EUR][1000 genomes]
rs35847686	1.00[EUR][1000 genomes]
rs35871462	0.89[EUR][1000 genomes]
rs35920523	0.90[EUR][1000 genomes]
rs36012390	0.94[EUR][1000 genomes]
rs36065595	0.94[EUR][1000 genomes]
rs3752671	0.85[EUR][1000 genomes]
rs61459829	0.88[EUR][1000 genomes]
rs66508949	1.00[EUR][1000 genomes]
rs67035495	0.93[EUR][1000 genomes]
rs6708098	0.91[EUR][1000 genomes]
rs6731674	0.88[EUR][1000 genomes]
rs6739732	0.94[EUR][1000 genomes]
rs67432566	0.90[EUR][1000 genomes]
rs67629903	0.93[EUR][1000 genomes]
rs67638453	0.88[EUR][1000 genomes]
rs67784166	0.94[EUR][1000 genomes]
rs67992386	0.88[EUR][1000 genomes]
rs71430186	0.90[EUR][1000 genomes]
rs71432404	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71432408	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72896456	0.94[EUR][1000 genomes]
rs7556993	1.00[EUR][1000 genomes]
rs7565527	0.85[EUR][1000 genomes]
rs7584519	0.93[EUR][1000 genomes]
rs7599251	1.00[EUR][1000 genomes]
rs9789468	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459982	chr2:186213755-186475590	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv584012	chr2:186213755-186475590	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875527	chr2:186272059-186475590	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875528	chr2:186301351-186475590	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004048	chr2:186303297-186541503	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv875530	chr2:186303530-186475590	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv875531	chr2:186303530-186489537	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv875534	chr2:186309738-186475590	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv875536	chr2:186309738-186504175	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv875539	chr2:186345148-186475590	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv875540	chr2:186345148-186583961	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv875541	chr2:186345148-186598526	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1006219	chr2:186352780-186524793	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv584017	chr2:186352959-186515328	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv584018	chr2:186352959-186598526	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv916442	chr2:186356363-186534152	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv875543	chr2:186365918-186489537	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1000814	chr2:186391490-186520872	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1007052	chr2:186441382-186864390	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv584019	chr2:186445393-186866874	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1000561	chr2:186450293-186556017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	nsv1009118	chr2:186450293-186864390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1004422	chr2:186463915-186556017	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
24	nsv962123	chr2:186472846-186477099	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186473000-186473600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:186473000-186473800	Enhancers	HMEC	breast
3	chr2:186473400-186473800	Enhancers	Fetal Kidney	kidney

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