Variant report

Variant	rs17230036
Chromosome Location	chr2:186678877-186678878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:186669335..186673195-chr2:186676461..186681487,4	MCF-7	breast:
2	chr2:186676855..186679682-chr2:187312216..187314480,2	MCF-7	breast:
3	chr2:186667156..186668174-chr2:186678025..186679009,3	MCF-7	breast:
4	chr2:186677322..186681085-chr2:186681928..186686220,4	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10170781	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10177147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10202023	0.91[EUR][1000 genomes]
rs11678064	0.94[EUR][1000 genomes]
rs11686018	0.89[EUR][1000 genomes]
rs11686062	0.91[EUR][1000 genomes]
rs11690475	0.91[EUR][1000 genomes]
rs11691687	0.85[EUR][1000 genomes]
rs11691944	0.85[EUR][1000 genomes]
rs11695761	0.85[EUR][1000 genomes]
rs12612048	0.90[ASN][1000 genomes]
rs12620075	0.90[ASN][1000 genomes]
rs12621471	0.90[ASN][1000 genomes]
rs12693416	0.96[EUR][1000 genomes]
rs12693418	0.90[ASN][1000 genomes]
rs12693419	0.90[ASN][1000 genomes]
rs12987892	0.90[ASN][1000 genomes]
rs12991386	0.89[EUR][1000 genomes]
rs12991410	0.91[EUR][1000 genomes]
rs12991698	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12995268	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs12998684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13012137	0.91[EUR][1000 genomes]
rs13030170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13030563	0.90[ASN][1000 genomes]
rs13030807	0.84[EUR][1000 genomes]
rs13031528	0.90[ASN][1000 genomes]
rs13032463	0.91[EUR][1000 genomes]
rs13033801	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13393583	0.91[EUR][1000 genomes]
rs13429390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13432887	0.85[EUR][1000 genomes]
rs17206943	0.89[EUR][1000 genomes]
rs17230101	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287607	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34000575	0.86[EUR][1000 genomes]
rs34093449	0.86[EUR][1000 genomes]
rs34113655	0.86[EUR][1000 genomes]
rs34191961	0.86[EUR][1000 genomes]
rs34221764	0.86[EUR][1000 genomes]
rs34338290	0.91[EUR][1000 genomes]
rs34396695	0.90[ASN][1000 genomes]
rs34401996	0.90[ASN][1000 genomes]
rs34449658	0.86[EUR][1000 genomes]
rs34626145	0.91[EUR][1000 genomes]
rs34631835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34654071	0.91[EUR][1000 genomes]
rs34877204	0.85[EUR][1000 genomes]
rs34879834	0.86[EUR][1000 genomes]
rs35110878	0.82[EUR][1000 genomes]
rs35165452	0.86[EUR][1000 genomes]
rs35267530	0.91[EUR][1000 genomes]
rs35289321	0.86[EUR][1000 genomes]
rs35320505	0.86[EUR][1000 genomes]
rs35479051	0.90[ASN][1000 genomes]
rs35537030	0.86[EUR][1000 genomes]
rs35638932	0.86[EUR][1000 genomes]
rs35639419	0.91[EUR][1000 genomes]
rs3752671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66508949	0.86[EUR][1000 genomes]
rs71432404	0.87[EUR][1000 genomes]
rs71432408	0.92[EUR][1000 genomes]
rs7556993	0.86[EUR][1000 genomes]
rs7565527	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584519	0.91[EUR][1000 genomes]
rs9789468	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007052	chr2:186441382-186864390	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv584019	chr2:186445393-186866874	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1009118	chr2:186450293-186864390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1008230	chr2:186474069-186818718	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536076	chr2:186474069-186818718	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv584021	chr2:186475590-186866841	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv1796337	chr2:186618494-186704965	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1797599	chr2:186618494-186882821	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17230036	DIRC1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186677000-186682800	Weak transcription	Left Ventricle	heart
2	chr2:186678200-186679400	Enhancers	HepG2	liver
3	chr2:186678600-186679000	Enhancers	Stomach Mucosa	stomach

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