Variant report

Variant	rs13036769
Chromosome Location	chr20:23078496-23078497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23069239..23071325-chr20:23078178..23079925,2	K562	blood:
2	chr20:23077030..23079208-chr20:23089965..23091827,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11697283	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1320561	0.94[EUR][1000 genomes]
rs1835700	0.85[EUR][1000 genomes]
rs2404885	0.95[EUR][1000 genomes]
rs6083004	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6132564	0.95[EUR][1000 genomes]
rs6137832	0.95[EUR][1000 genomes]
rs6515302	0.80[CEU][hapmap]
rs8122415	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs946368	1.00[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23069000-23080400	Weak transcription	Fetal Thymus	thymus
2	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:23073000-23087000	Weak transcription	Gastric	stomach
4	chr20:23073800-23079400	Enhancers	Esophagus	oesophagus
5	chr20:23073800-23085800	Weak transcription	Right Ventricle	heart
6	chr20:23074600-23080400	Weak transcription	Spleen	Spleen
7	chr20:23074600-23082200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:23074600-23083000	Weak transcription	Right Atrium	heart
9	chr20:23075000-23079000	Enhancers	HMEC	breast
10	chr20:23075000-23083000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr20:23075000-23085600	Weak transcription	Fetal Lung	lung
12	chr20:23075200-23078800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr20:23076200-23079200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr20:23076600-23082400	Weak transcription	HUVEC	blood vessel
15	chr20:23076800-23079200	Enhancers	Lung	lung
16	chr20:23077400-23078800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr20:23077400-23079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr20:23077400-23084800	Enhancers	Placenta	Placenta
19	chr20:23077600-23079000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr20:23077600-23079000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr20:23077800-23078800	Enhancers	NHEK	skin
22	chr20:23077800-23080600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr20:23077800-23082400	Weak transcription	Left Ventricle	heart
24	chr20:23078200-23078600	Weak transcription	Adipose Nuclei	Adipose
25	chr20:23078200-23079400	Enhancers	Primary monocytes fromperipheralblood	blood

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