Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:23077030..23079208-chr20:23089965..23091827,2	K562	blood:
2	chr20:23087953..23091765-chr20:23104298..23106744,4	K562	blood:
3	chr20:23079507..23082069-chr20:23090544..23092164,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11697283	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs13036769	0.95[EUR][1000 genomes]
rs1320561	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1338945	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1835700	0.85[EUR][1000 genomes]
rs2404885	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036310	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs6076027	0.89[CHB][hapmap];0.87[CHD][hapmap]
rs6083004	0.96[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6113942	0.98[ASN][1000 genomes]
rs6137830	0.98[ASN][1000 genomes]
rs6137832	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs699794	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs699795	0.89[CHB][hapmap];0.88[CHD][hapmap]
rs8122415	0.85[CEU][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs844816	0.89[CHB][hapmap]
rs844819	0.93[CHB][hapmap]
rs844851	0.89[CHB][hapmap];0.90[CHD][hapmap]
rs844852	0.84[CHB][hapmap]
rs844855	0.89[CHB][hapmap]
rs844857	0.89[CHB][hapmap]
rs946368	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23085800-23114600	Enhancers	Placenta	Placenta
3	chr20:23086200-23092800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr20:23086200-23094200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr20:23087000-23093800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr20:23087600-23092000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr20:23088000-23100000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr20:23088200-23094000	Weak transcription	Primary B cells from cord blood	blood
9	chr20:23088200-23094800	Weak transcription	Right Atrium	heart
10	chr20:23088200-23095000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr20:23088200-23096800	Weak transcription	Esophagus	oesophagus
12	chr20:23088400-23093600	Weak transcription	Adipose Nuclei	Adipose
13	chr20:23088400-23094400	Weak transcription	Left Ventricle	heart
14	chr20:23088800-23093400	Weak transcription	Fetal Muscle Leg	muscle
15	chr20:23089600-23094600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr20:23090000-23091600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr20:23090000-23094800	Weak transcription	Lung	lung
18	chr20:23090400-23093400	Weak transcription	Spleen	Spleen
19	chr20:23091200-23091600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr20:23091200-23100600	Enhancers	Dnd41	blood
21	chr20:23091400-23092000	Enhancers	Fetal Thymus	thymus

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