Variant report

Variant	rs6137832
Chromosome Location	chr20:23094353-23094354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23093195..23094992-chr20:23095074..23097228,2	MCF-7	breast:
2	chr20:23092388..23096498-chr20:23127168..23130418,4	K562	blood:
3	chr20:23092456..23098917-chr20:23127069..23136117,14	K562	blood:
4	chr20:23092796..23095143-chr20:23110138..23112682,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11697283	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13036769	0.95[EUR][1000 genomes]
rs1320561	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1338945	0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1835700	0.86[EUR][1000 genomes]
rs2404885	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036310	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs6076027	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs6083004	0.96[CEU][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6113942	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6132564	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137830	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs699794	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs699795	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs8122415	0.85[CEU][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs844816	0.85[CHB][hapmap]
rs844819	0.88[CHB][hapmap]
rs844851	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs844855	0.85[CHB][hapmap]
rs844857	0.84[CHB][hapmap]
rs946368	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23088000-23100000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr20:23088200-23094800	Weak transcription	Right Atrium	heart
4	chr20:23088200-23095000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr20:23088200-23096800	Weak transcription	Esophagus	oesophagus
6	chr20:23088400-23094400	Weak transcription	Left Ventricle	heart
7	chr20:23089600-23094600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr20:23090000-23094800	Weak transcription	Lung	lung
9	chr20:23091200-23100600	Enhancers	Dnd41	blood
10	chr20:23092400-23095000	Enhancers	Fetal Thymus	thymus
11	chr20:23092400-23099600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr20:23092800-23097600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr20:23093000-23103200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr20:23093200-23094800	Weak transcription	GM12878-XiMat	blood
15	chr20:23093200-23095600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr20:23093200-23096800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr20:23093200-23099000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr20:23093400-23095200	Enhancers	K562	blood
19	chr20:23093400-23095400	Enhancers	Spleen	Spleen
20	chr20:23093600-23095600	Enhancers	Adipose Nuclei	Adipose
21	chr20:23093800-23095200	Enhancers	Fetal Stomach	stomach
22	chr20:23093800-23096200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr20:23093800-23097000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr20:23094000-23094600	Enhancers	Primary B cells from cord blood	blood
25	chr20:23094000-23094800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr20:23094000-23095600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr20:23094000-23095800	Enhancers	Fetal Muscle Leg	muscle
28	chr20:23094200-23094400	Enhancers	Brain Hippocampus Middle	brain
29	chr20:23094200-23094800	Enhancers	Liver	Liver
30	chr20:23094200-23095800	Enhancers	Fetal Muscle Trunk	muscle
31	chr20:23094200-23096000	Enhancers	Primary hematopoietic stem cells	blood

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