Variant report

Variant	rs6113942
Chromosome Location	chr20:23086679-23086680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23046496..23048382-chr20:23085571..23088058,2	MCF-7	breast:
2	chr20:23080717..23083720-chr20:23084515..23087690,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1338945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2404885	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6036310	0.90[CHB][hapmap]
rs6076027	0.90[CHB][hapmap]
rs6132564	0.98[ASN][1000 genomes]
rs6137830	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137832	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs699794	0.90[CHB][hapmap]
rs699795	0.90[CHB][hapmap]
rs844816	0.86[CHB][hapmap]
rs844819	0.89[CHB][hapmap]
rs844831	0.82[AFR][1000 genomes]
rs844851	0.90[CHB][hapmap]
rs844852	0.81[CHB][hapmap]
rs844855	0.86[CHB][hapmap]
rs844857	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23073000-23087000	Weak transcription	Gastric	stomach
3	chr20:23082000-23089000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr20:23082400-23088400	Enhancers	Adipose Nuclei	Adipose
5	chr20:23082400-23088400	Enhancers	HUVEC	blood vessel
6	chr20:23082400-23088800	Enhancers	Fetal Muscle Leg	muscle
7	chr20:23083400-23087200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:23084200-23086800	Enhancers	Primary B cells from cord blood	blood
9	chr20:23084200-23088400	Enhancers	Left Ventricle	heart
10	chr20:23084400-23088400	Enhancers	Fetal Muscle Trunk	muscle
11	chr20:23084400-23088400	Enhancers	Lung	lung
12	chr20:23084400-23089000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr20:23084600-23086800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr20:23084600-23087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr20:23085000-23086800	Weak transcription	HSMM	muscle
16	chr20:23085200-23086800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr20:23085200-23086800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr20:23085200-23087000	Weak transcription	Right Atrium	heart
19	chr20:23085200-23087400	Weak transcription	Brain Hippocampus Middle	brain
20	chr20:23085400-23088200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr20:23085600-23088000	Enhancers	Fetal Lung	lung
22	chr20:23085800-23087000	Enhancers	Psoas Muscle	Psoas
23	chr20:23085800-23087400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr20:23085800-23114600	Enhancers	Placenta	Placenta
25	chr20:23086200-23087400	Weak transcription	Esophagus	oesophagus
26	chr20:23086200-23092800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr20:23086200-23094200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr20:23086400-23087200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr20:23086400-23087600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr20:23086400-23088000	Weak transcription	Right Ventricle	heart
31	chr20:23086400-23088400	Enhancers	Fetal Stomach	stomach
32	chr20:23086400-23091400	Weak transcription	Fetal Thymus	thymus
33	chr20:23086600-23087000	Enhancers	Stomach Smooth Muscle	stomach
34	chr20:23086600-23087000	Weak transcription	Spleen	Spleen

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