Variant report

Variant	rs13040810
Chromosome Location	chr20:24619771-24619772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4813525	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4815292	0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs4815293	0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs6083569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7268328	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24614600-24619800	Weak transcription	Esophagus	oesophagus
2	chr20:24615200-24620200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:24615400-24633800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr20:24616200-24639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr20:24616400-24630200	Weak transcription	Brain Angular Gyrus	brain
6	chr20:24617800-24623600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr20:24618200-24619800	Enhancers	Brain Substantia Nigra	brain
8	chr20:24618200-24620200	Enhancers	Thymus	Thymus
9	chr20:24618400-24621000	Enhancers	Fetal Thymus	thymus
10	chr20:24618600-24620000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr20:24619000-24619800	Enhancers	Fetal Intestine Large	intestine
12	chr20:24619000-24620200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr20:24619200-24620800	Enhancers	Brain Hippocampus Middle	brain
14	chr20:24619400-24619800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr20:24619400-24620000	Active TSS	Gastric	stomach
16	chr20:24619600-24619800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr20:24619600-24620000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr20:24619600-24620000	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links