Variant report

Variant	rs7268328
Chromosome Location	chr20:24613952-24613953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24612466..24614630-chr20:24629800..24632618,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13040810	0.92[ASN][1000 genomes]
rs16986777	0.89[EUR][1000 genomes]
rs16986779	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4813525	0.84[ASN][1000 genomes]
rs4815292	0.83[ASN][1000 genomes]
rs4815293	0.81[ASN][1000 genomes]
rs6036845	0.80[AMR][1000 genomes]
rs6049796	0.80[AMR][1000 genomes]
rs6049801	0.83[AMR][1000 genomes]
rs6049803	0.83[AMR][1000 genomes]
rs6049804	0.83[AMR][1000 genomes]
rs6083569	0.92[ASN][1000 genomes]
rs6083570	0.89[ASN][1000 genomes]
rs6106914	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6106915	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6114791	0.83[AMR][1000 genomes]
rs6114802	0.83[AMR][1000 genomes]
rs62215312	0.95[EUR][1000 genomes]
rs62215323	0.89[EUR][1000 genomes]
rs742803	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
3	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
5	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
7	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
9	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr20:24611400-24615400	Weak transcription	Fetal Thymus	thymus
14	chr20:24612600-24614600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr20:24612800-24614800	Weak transcription	Brain Angular Gyrus	brain
16	chr20:24613000-24615200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr20:24613200-24614000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr20:24613200-24614000	Enhancers	Brain Cingulate Gyrus	brain
19	chr20:24613200-24614200	Enhancers	Fetal Muscle Leg	muscle
20	chr20:24613400-24614000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr20:24613400-24614000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr20:24613400-24614200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr20:24613400-24614200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr20:24613400-24614400	Enhancers	HSMM	muscle
25	chr20:24613400-24615000	Enhancers	NHEK	skin
26	chr20:24613400-24616200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr20:24613400-24616200	Enhancers	HMEC	breast
28	chr20:24613400-24616200	Enhancers	NH-A	brain
29	chr20:24613400-24616600	Enhancers	Brain Substantia Nigra	brain
30	chr20:24613400-24618000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr20:24613600-24614000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr20:24613600-24614000	Enhancers	Fetal Muscle Trunk	muscle
33	chr20:24613600-24614200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr20:24613600-24614200	ZNF genes & repeats	Aorta	Aorta
35	chr20:24613600-24615800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr20:24613600-24616200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr20:24613800-24614000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr20:24613800-24614000	Genic enhancers	Gastric	stomach
39	chr20:24613800-24614600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr20:24613800-24614600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr20:24613800-24614600	Enhancers	Esophagus	oesophagus
42	chr20:24613800-24614600	Enhancers	Left Ventricle	heart
43	chr20:24613800-24614600	Enhancers	Lung	lung
44	chr20:24613800-24614800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr20:24613800-24616000	Enhancers	Brain Anterior Caudate	brain
46	chr20:24613800-24616000	Enhancers	NHDF-Ad	bronchial
47	chr20:24613800-24616200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr20:24613800-24616200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr20:24613800-24618000	Enhancers	H9 Cell Line	embryonic stem cell

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