Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16986777	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4813525	0.85[JPT][hapmap]
rs4815280	0.86[JPT][hapmap]
rs4815281	0.86[JPT][hapmap]
rs6036845	0.91[AMR][1000 genomes]
rs6036846	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes]
rs6036850	0.85[JPT][hapmap]
rs6049796	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[AMR][1000 genomes]
rs6049798	0.86[JPT][hapmap]
rs6049801	0.94[AMR][1000 genomes]
rs6049803	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[AMR][1000 genomes]
rs6049804	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[AMR][1000 genomes]
rs6049809	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs6049811	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6106914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114791	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[AMR][1000 genomes]
rs6114802	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62215312	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215323	0.83[EUR][1000 genomes]
rs7268328	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs742803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
3	chr20:24591200-24609200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24594400-24608400	Weak transcription	Spleen	Spleen
5	chr20:24594600-24599800	Weak transcription	Left Ventricle	heart
6	chr20:24594600-24600400	Weak transcription	Thymus	Thymus
7	chr20:24594600-24601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24594800-24599800	Weak transcription	Right Atrium	heart
9	chr20:24597800-24600400	Weak transcription	Fetal Thymus	thymus
10	chr20:24598000-24601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr20:24598200-24599800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr20:24599200-24600000	Enhancers	Brain Angular Gyrus	brain
13	chr20:24599200-24600000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr20:24599400-24599800	Enhancers	Primary B cells from cord blood	blood
15	chr20:24599400-24600200	Enhancers	Brain Hippocampus Middle	brain
16	chr20:24599400-24600600	Enhancers	Primary B cells from peripheral blood	blood
17	chr20:24599400-24600600	Enhancers	Fetal Heart	heart
18	chr20:24599600-24600000	Enhancers	Brain Substantia Nigra	brain
19	chr20:24599600-24600800	Enhancers	Fetal Lung	lung

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