Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16986779	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4813525	0.85[JPT][hapmap]
rs4815280	0.86[JPT][hapmap]
rs4815281	0.86[JPT][hapmap]
rs4815283	0.86[JPT][hapmap]
rs6036846	1.00[CEU][hapmap]
rs6036850	0.85[JPT][hapmap]
rs6049796	1.00[CEU][hapmap]
rs6049798	0.86[JPT][hapmap]
rs6049803	1.00[CEU][hapmap]
rs6049804	1.00[CEU][hapmap]
rs6049809	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes]
rs6049811	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6106914	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6106915	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6114791	1.00[CEU][hapmap]
rs6114802	0.84[ASN][1000 genomes]
rs62215308	0.80[AMR][1000 genomes]
rs62215309	0.91[AMR][1000 genomes]
rs62215310	0.91[AMR][1000 genomes]
rs62215312	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7268328	0.89[EUR][1000 genomes]
rs742803	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
3	chr20:24591200-24609200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24591600-24597600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr20:24592000-24599400	Weak transcription	Brain Hippocampus Middle	brain
6	chr20:24592200-24598000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr20:24594200-24599600	Weak transcription	Brain Substantia Nigra	brain
8	chr20:24594400-24597800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24594400-24608400	Weak transcription	Spleen	Spleen
10	chr20:24594600-24599200	Weak transcription	Brain Angular Gyrus	brain
11	chr20:24594600-24599400	Weak transcription	Fetal Heart	heart
12	chr20:24594600-24599800	Weak transcription	Left Ventricle	heart
13	chr20:24594600-24600400	Weak transcription	Thymus	Thymus
14	chr20:24594600-24601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:24594800-24599800	Weak transcription	Right Atrium	heart
16	chr20:24596800-24597800	Enhancers	Fetal Thymus	thymus
17	chr20:24596800-24598400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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