Variant report

Variant	rs6106914
Chromosome Location	chr20:24601115-24601116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16986777	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16986779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036845	0.91[AMR][1000 genomes]
rs6036846	0.86[AMR][1000 genomes]
rs6049796	0.91[AMR][1000 genomes]
rs6049801	0.94[AMR][1000 genomes]
rs6049803	0.94[AMR][1000 genomes]
rs6049804	0.94[AMR][1000 genomes]
rs6049811	0.81[ASN][1000 genomes]
rs6106915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114791	0.94[AMR][1000 genomes]
rs6114802	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62215312	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215323	0.83[EUR][1000 genomes]
rs7268328	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs742803	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
2	chr20:24591200-24609200	Weak transcription	Brain Anterior Caudate	brain
3	chr20:24594400-24608400	Weak transcription	Spleen	Spleen
4	chr20:24594600-24601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:24598000-24601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr20:24599800-24601200	Enhancers	Left Ventricle	heart
7	chr20:24600000-24609600	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24600200-24608200	Weak transcription	Brain Hippocampus Middle	brain
9	chr20:24600400-24601200	Enhancers	Fetal Thymus	thymus
10	chr20:24600600-24601400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:24600600-24608000	Weak transcription	Right Atrium	heart
12	chr20:24600600-24608400	Weak transcription	Fetal Heart	heart
13	chr20:24600600-24608800	Weak transcription	Thymus	Thymus
14	chr20:24600800-24602000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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