Variant report

Variant	rs6036846
Chromosome Location	chr20:24582907-24582908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16986777	1.00[CEU][hapmap]
rs16986779	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes]
rs4087431	0.80[ASN][1000 genomes]
rs4813525	0.85[JPT][hapmap]
rs4815280	0.86[JPT][hapmap]
rs4815281	0.86[JPT][hapmap]
rs4815283	0.86[JPT][hapmap]
rs6036845	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036850	0.85[JPT][hapmap]
rs6049796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049798	0.86[JPT][hapmap]
rs6049801	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049809	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6083557	0.83[EUR][1000 genomes]
rs6106914	0.86[AMR][1000 genomes]
rs6106915	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes]
rs6114791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6114802	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62215308	0.96[EUR][1000 genomes]
rs62215309	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62215310	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73098723	0.91[EUR][1000 genomes]
rs742803	1.00[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24571400-24584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24580600-24586000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:24581600-24584000	Weak transcription	Aorta	Aorta
4	chr20:24581800-24585800	Weak transcription	Brain Hippocampus Middle	brain
5	chr20:24581800-24590600	Weak transcription	Brain Anterior Caudate	brain
6	chr20:24582200-24586000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr20:24582600-24585800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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