Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16986777	0.84[ASN][1000 genomes]
rs16986779	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4087431	0.80[ASN][1000 genomes]
rs6036845	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6036846	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6049796	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6049801	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6049803	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6049804	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6049809	0.98[EUR][1000 genomes]
rs6083557	0.82[EUR][1000 genomes]
rs6106914	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6106915	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6114791	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62215308	0.95[EUR][1000 genomes]
rs62215309	0.96[EUR][1000 genomes]
rs62215310	0.96[EUR][1000 genomes]
rs62215312	0.82[ASN][1000 genomes]
rs7268328	0.83[AMR][1000 genomes]
rs73098723	0.90[EUR][1000 genomes]
rs742803	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24581800-24590600	Weak transcription	Brain Anterior Caudate	brain
2	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24584400-24591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
5	chr20:24585200-24591000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:24585800-24590800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24586000-24590800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24586800-24590000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr20:24587000-24590400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr20:24587000-24590800	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:24587000-24591000	Weak transcription	Brain Substantia Nigra	brain
12	chr20:24588800-24589400	Enhancers	GM12878-XiMat	blood

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