Variant report

Variant	rs62215309
Chromosome Location	chr20:24577261-24577262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16986777	0.91[AMR][1000 genomes]
rs6036845	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036846	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6049796	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6049801	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6049803	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6049804	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6049809	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083557	0.85[EUR][1000 genomes]
rs6114791	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6114802	0.96[EUR][1000 genomes]
rs62215308	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62215310	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215312	0.83[AMR][1000 genomes]
rs73098723	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24568200-24577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24571400-24584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24574600-24580200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:24576400-24578600	Weak transcription	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links