Variant report

Variant	rs73098723
Chromosome Location	chr20:24565066-24565067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6036845	0.93[EUR][1000 genomes]
rs6036846	0.91[EUR][1000 genomes]
rs6049796	0.93[EUR][1000 genomes]
rs6049801	0.93[EUR][1000 genomes]
rs6049803	0.93[EUR][1000 genomes]
rs6049804	0.93[EUR][1000 genomes]
rs6049809	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083557	0.89[EUR][1000 genomes]
rs6114791	0.93[EUR][1000 genomes]
rs6114802	0.90[EUR][1000 genomes]
rs62215308	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62215309	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62215310	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24549800-24565800	Weak transcription	Thymus	Thymus
3	chr20:24562400-24567400	Weak transcription	Fetal Brain Female	brain
4	chr20:24562600-24570000	Weak transcription	Spleen	Spleen
5	chr20:24563400-24566400	Weak transcription	Fetal Brain Male	brain
6	chr20:24564200-24565600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:24564600-24565800	Enhancers	Brain Hippocampus Middle	brain
8	chr20:24564600-24566800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24564800-24565600	Enhancers	Brain Anterior Caudate	brain
10	chr20:24564800-24565600	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:24564800-24565600	Enhancers	Fetal Lung	lung
12	chr20:24564800-24565800	Enhancers	Brain Angular Gyrus	brain
13	chr20:24564800-24566000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr20:24564800-24566200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr20:24564800-24566200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr20:24565000-24565600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr20:24565000-24565600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr20:24565000-24565600	Enhancers	Brain Substantia Nigra	brain
19	chr20:24565000-24565800	Enhancers	Brain Germinal Matrix	brain
20	chr20:24565000-24565800	Enhancers	Fetal Muscle Leg	muscle
21	chr20:24565000-24565800	Enhancers	NH-A	brain
22	chr20:24565000-24565800	Enhancers	Osteobl	bone
23	chr20:24565000-24566000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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