Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12480522	0.84[MEX][hapmap]
rs12481129	0.84[MEX][hapmap]
rs16986777	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16986779	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17823746	0.80[MEX][hapmap]
rs2024608	0.80[MEX][hapmap]
rs4087431	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4813524	0.80[MEX][hapmap]
rs4813525	0.85[JPT][hapmap]
rs4815280	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs4815281	0.88[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs4815283	0.88[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs4815286	0.84[MEX][hapmap]
rs6036843	0.84[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs6036850	0.92[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6049798	0.88[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs6049809	0.85[JPT][hapmap]
rs6106914	0.81[ASN][1000 genomes]
rs6106915	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs62215312	0.81[ASN][1000 genomes]
rs7271447	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs742803	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24581800-24590600	Weak transcription	Brain Anterior Caudate	brain
2	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24584400-24591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
5	chr20:24585200-24591000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:24585800-24590800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24586000-24590800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24586800-24590000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr20:24587000-24590400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr20:24587000-24590800	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:24587000-24591000	Weak transcription	Brain Substantia Nigra	brain
12	chr20:24589400-24590400	Flanking Active TSS	GM12878-XiMat	blood
13	chr20:24589400-24590800	Enhancers	Primary B cells from peripheral blood	blood
14	chr20:24589400-24594000	Weak transcription	Primary T cells from cord blood	blood
15	chr20:24589600-24590800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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