Variant report

Variant rs12481129
Chromosome Location chr20:24590332-24590333
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:22 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24581800-24590600 Weak transcription Brain Anterior Caudate brain
2 chr20:24583200-24599800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr20:24584400-24591000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr20:24584400-24612600 Weak transcription Aorta Aorta
5 chr20:24585200-24591000 Weak transcription H1 Cell Line embryonic stem cell
6 chr20:24585800-24590800 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr20:24586000-24590800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr20:24587000-24590400 Weak transcription Brain Inferior Temporal Lobe brain
9 chr20:24587000-24590800 Weak transcription Brain Hippocampus Middle brain
10 chr20:24587000-24591000 Weak transcription Brain Substantia Nigra brain
11 chr20:24589400-24590400 Flanking Active TSS GM12878-XiMat blood
12 chr20:24589400-24590800 Enhancers Primary B cells from peripheral blood blood
13 chr20:24589400-24594000 Weak transcription Primary T cells from cord blood blood
14 chr20:24589600-24590800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr20:24589800-24590600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr20:24590000-24590600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr20:24590000-24591000 Enhancers HSMMtube muscle
18 chr20:24590000-24591200 Enhancers iPS-20b Cell Line embryonic stem cell
19 chr20:24590000-24592200 Enhancers Brain Cingulate Gyrus brain
20 chr20:24590000-24592400 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr20:24590000-24592600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr20:24590200-24592000 Enhancers HUES6 Cell Line embryonic stem cell

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