Variant report

Variant	rs60869925
Chromosome Location	chr20:24611126-24611127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24610034..24611986-chr20:24615289..24617855,2	MCF-7	breast:
2	chr20:24610820..24613195-chr8:23266116..23269029,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12480522	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12481129	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12481146	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17250068	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17823746	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883923	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887057	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2024608	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2026566	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2179800	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2892216	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4813523	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813524	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815282	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4815286	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815287	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815288	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815289	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815290	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4815291	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770994	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58949684	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036849	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036851	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036854	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7268862	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73345329	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73345369	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118304	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
2	chr20:24607800-24611600	Enhancers	Brain Substantia Nigra	brain
3	chr20:24608400-24611400	Enhancers	Fetal Heart	heart
4	chr20:24608400-24613200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:24608600-24611400	Enhancers	Fetal Thymus	thymus
6	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
8	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr20:24609600-24612200	Enhancers	Brain Cingulate Gyrus	brain
10	chr20:24610400-24611400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:24610400-24611400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr20:24610400-24613400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr20:24610400-24613800	Weak transcription	Brain Anterior Caudate	brain
14	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
15	chr20:24610600-24613200	Weak transcription	Fetal Muscle Leg	muscle
16	chr20:24610600-24613800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr20:24610600-24613800	Weak transcription	Gastric	stomach
18	chr20:24610600-24613800	Weak transcription	Left Ventricle	heart
19	chr20:24610600-24613800	Weak transcription	Lung	lung
20	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
22	chr20:24610800-24612400	Weak transcription	Brain Angular Gyrus	brain
23	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
25	chr20:24611000-24613800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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