Variant report

Variant	rs4813523
Chromosome Location	chr20:24594600-24594601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12480522	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12481129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12481146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17250068	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17823746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887057	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2024608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2026566	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2179800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2892216	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4813524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815282	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4815286	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815287	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815288	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815289	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815290	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4815291	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770994	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58949684	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036849	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036851	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036854	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60869925	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7268862	0.95[CEU][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73345329	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73345369	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345393	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118304	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
3	chr20:24591200-24609200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24591600-24597600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr20:24592000-24594600	Enhancers	Fetal Heart	heart
6	chr20:24592000-24599400	Weak transcription	Brain Hippocampus Middle	brain
7	chr20:24592200-24598000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr20:24593400-24594600	Enhancers	Fetal Thymus	thymus
9	chr20:24593400-24594600	Enhancers	Left Ventricle	heart
10	chr20:24593400-24594600	Enhancers	Thymus	Thymus
11	chr20:24593400-24594800	Enhancers	Right Atrium	heart
12	chr20:24594000-24596800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr20:24594200-24594600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr20:24594200-24599600	Weak transcription	Brain Substantia Nigra	brain
15	chr20:24594400-24594600	Enhancers	Brain Angular Gyrus	brain
16	chr20:24594400-24597800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr20:24594400-24608400	Weak transcription	Spleen	Spleen
18	chr20:24594600-24596800	Weak transcription	Fetal Thymus	thymus
19	chr20:24594600-24599200	Weak transcription	Brain Angular Gyrus	brain
20	chr20:24594600-24599400	Weak transcription	Fetal Heart	heart
21	chr20:24594600-24599800	Weak transcription	Left Ventricle	heart
22	chr20:24594600-24600400	Weak transcription	Thymus	Thymus
23	chr20:24594600-24601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links