Variant report

Variant	rs73345329
Chromosome Location	chr20:24580440-24580441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24441261..24441801-chr20:24580346..24581116,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12480522	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481129	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12481146	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17250068	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17823746	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1883923	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1887057	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024608	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2026566	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179800	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2892216	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4813523	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4813524	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4815282	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815286	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4815287	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4815288	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4815289	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4815290	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4815291	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55770994	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58949684	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6036849	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6036851	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60869925	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7268862	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345369	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73345393	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8118304	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24571400-24584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24580200-24580600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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