Variant report

Variant	rs1304349
Chromosome Location	chr4:91789353-91789354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10021524	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.83[EUR][1000 genomes]
rs10022407	0.87[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs11725824	0.83[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[EUR][1000 genomes]
rs11725878	0.83[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[EUR][1000 genomes]
rs13132666	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs13136779	0.88[EUR][1000 genomes]
rs1902035	0.93[EUR][1000 genomes]
rs2904371	0.83[CHD][hapmap]
rs2904373	0.82[EUR][1000 genomes]
rs4643780	0.93[EUR][1000 genomes]
rs4693247	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs6532250	0.81[EUR][1000 genomes]
rs6854946	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9998356	0.83[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1304349	DHX37	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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