Variant report

Variant	rs10021524
Chromosome Location	chr4:91762984-91762985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10022407	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11725824	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11725878	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11936158	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1304349	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap]
rs13132666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13136779	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1377915	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1902035	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28526093	0.80[ASN][1000 genomes]
rs2904371	0.91[JPT][hapmap]
rs2904373	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4321604	0.90[JPT][hapmap]
rs4404510	0.81[ASN][1000 genomes]
rs4643780	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693247	0.87[GIH][hapmap]
rs6532250	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6854946	0.95[CEU][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9998356	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10021524	DHX37	trans	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91752400-91775000	Weak transcription	Pancreas	Pancrea
2	chr4:91754600-91771400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:91761600-91764600	Enhancers	HMEC	breast
4	chr4:91761600-91764600	Enhancers	NHEK	skin
5	chr4:91761800-91763200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:91762000-91763800	Enhancers	HUVEC	blood vessel
7	chr4:91762200-91763000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:91762600-91763000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:91762600-91763600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links