Variant report

Variant	rs4321604
Chromosome Location	chr4:91745333-91745334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10021524	0.90[JPT][hapmap]
rs10022407	0.91[JPT][hapmap]
rs11936158	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs13132666	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs13136779	0.82[ASN][1000 genomes]
rs1377915	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs28526093	0.85[ASN][1000 genomes]
rs2904371	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4404510	0.96[ASN][1000 genomes]
rs56712335	0.82[ASN][1000 genomes]
rs57557634	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6854946	0.82[ASN][1000 genomes]
rs9790423	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9790785	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91735400-91745800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91735600-91754200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:91736400-91753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:91745000-91746200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:91745200-91745400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:91745200-91745600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:91745200-91746000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:91745200-91746200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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