Variant report

Variant	rs2904371
Chromosome Location	chr4:91752692-91752693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10021524	0.91[JPT][hapmap]
rs10022407	0.80[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11936158	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1304349	0.83[CHD][hapmap]
rs13132666	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs13136779	0.81[ASN][1000 genomes]
rs1377915	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1902035	0.82[ASN][1000 genomes]
rs28526093	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904373	0.85[ASN][1000 genomes]
rs4321604	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4404510	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57557634	0.94[ASN][1000 genomes]
rs6854946	0.81[ASN][1000 genomes]
rs9790423	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9790785	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv980142	chr4:91751677-91756947	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91735600-91754200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:91736400-91753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:91746200-91761400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:91749800-91754600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:91751000-91753200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:91751000-91754400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:91751600-91754400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:91751800-91753000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:91752200-91752800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:91752400-91754200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:91752400-91754400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:91752400-91754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:91752400-91775000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links