Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13054508	1.00[CEU][hapmap]
rs13056121	0.94[EUR][1000 genomes]
rs13056319	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13056425	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13057685	0.85[EUR][1000 genomes]
rs13057692	0.88[EUR][1000 genomes]
rs13058473	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16986197	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2142917	0.94[EUR][1000 genomes]
rs34176007	0.94[EUR][1000 genomes]
rs34262300	1.00[EUR][1000 genomes]
rs34453094	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34783791	0.94[EUR][1000 genomes]
rs34925495	0.94[EUR][1000 genomes]
rs34962554	1.00[EUR][1000 genomes]
rs35051985	1.00[EUR][1000 genomes]
rs35738822	0.94[EUR][1000 genomes]
rs35812775	1.00[EUR][1000 genomes]
rs71325290	0.88[EUR][1000 genomes]
rs7286202	1.00[CEU][hapmap]
rs8142398	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3422513	chr22:28652702-28656200	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
2	chr22:28641000-28655800	Weak transcription	Fetal Kidney	kidney
3	chr22:28644200-28656600	Weak transcription	Left Ventricle	heart
4	chr22:28644200-28661400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr22:28644400-28662400	Weak transcription	Psoas Muscle	Psoas
6	chr22:28645000-28655600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:28646000-28664000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr22:28651600-28663000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr22:28651800-28690600	Weak transcription	Dnd41	blood
10	chr22:28653000-28664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr22:28653000-28665000	Weak transcription	Fetal Muscle Leg	muscle
12	chr22:28653000-28671600	Weak transcription	Fetal Stomach	stomach
13	chr22:28653200-28655800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr22:28653200-28655800	Weak transcription	Fetal Lung	lung
15	chr22:28653600-28655800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:28653600-28656000	Weak transcription	Small Intestine	intestine
17	chr22:28654800-28656200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr22:28655400-28657000	Enhancers	Brain Hippocampus Middle	brain
19	chr22:28655400-28657000	Enhancers	Brain Substantia Nigra	brain

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