Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13053179	1.00[AFR][1000 genomes]
rs13054508	0.82[EUR][1000 genomes]
rs13056121	0.88[EUR][1000 genomes]
rs13056319	0.94[EUR][1000 genomes]
rs13056425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13056776	1.00[AFR][1000 genomes]
rs13057182	0.94[EUR][1000 genomes]
rs13057685	0.91[EUR][1000 genomes]
rs13057692	0.94[EUR][1000 genomes]
rs13058473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16986197	0.91[EUR][1000 genomes]
rs2142917	0.89[EUR][1000 genomes]
rs34013124	1.00[AFR][1000 genomes]
rs34262300	0.94[EUR][1000 genomes]
rs34453094	0.94[EUR][1000 genomes]
rs34586539	1.00[AFR][1000 genomes]
rs34783791	1.00[EUR][1000 genomes]
rs34925495	1.00[EUR][1000 genomes]
rs34962554	0.94[EUR][1000 genomes]
rs35051985	0.94[EUR][1000 genomes]
rs35417721	1.00[AFR][1000 genomes]
rs35523745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35719457	0.82[EUR][1000 genomes]
rs35738822	0.88[EUR][1000 genomes]
rs35812775	0.94[EUR][1000 genomes]
rs71325290	0.94[EUR][1000 genomes]
rs8142398	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv526760	chr22:28706220-28719656	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28693800-28716000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr22:28694600-28711800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr22:28696200-28711800	Weak transcription	Gastric	stomach
4	chr22:28696200-28716000	Weak transcription	Fetal Lung	lung
5	chr22:28702800-28714200	Weak transcription	Dnd41	blood
6	chr22:28708000-28711800	Weak transcription	HepG2	liver
7	chr22:28709600-28711800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr22:28710800-28712400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr22:28711000-28718400	Weak transcription	Stomach Mucosa	stomach
10	chr22:28711000-28719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr22:28711200-28712200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr22:28711200-28713000	Enhancers	K562	blood
13	chr22:28711600-28711800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr22:28711600-28712200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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