Variant report

Variant	rs35738822
Chromosome Location	chr22:28641974-28641975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13056121	1.00[EUR][1000 genomes]
rs13056319	0.94[EUR][1000 genomes]
rs13056425	0.88[EUR][1000 genomes]
rs13057182	0.94[EUR][1000 genomes]
rs13057692	0.82[EUR][1000 genomes]
rs13058473	0.88[EUR][1000 genomes]
rs13058493	0.81[AMR][1000 genomes]
rs16986197	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2142917	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34176007	0.88[EUR][1000 genomes]
rs34262300	0.94[EUR][1000 genomes]
rs34453094	0.94[EUR][1000 genomes]
rs34783791	0.88[EUR][1000 genomes]
rs34925495	0.88[EUR][1000 genomes]
rs34962554	0.94[EUR][1000 genomes]
rs35051985	0.94[EUR][1000 genomes]
rs35812775	0.94[EUR][1000 genomes]
rs71325275	0.81[AMR][1000 genomes]
rs71325276	0.81[AMR][1000 genomes]
rs71325290	0.82[EUR][1000 genomes]
rs8142398	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
2	chr22:28628200-28643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr22:28635600-28650800	Weak transcription	Dnd41	blood
4	chr22:28638400-28642000	Enhancers	K562	blood
5	chr22:28639400-28642200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr22:28639400-28643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr22:28639400-28643600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr22:28639400-28643800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr22:28639400-28644000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr22:28639400-28644200	Enhancers	Osteobl	bone
11	chr22:28639400-28645800	Enhancers	Fetal Heart	heart
12	chr22:28639600-28642200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr22:28639600-28642800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:28639600-28643200	Enhancers	HSMM	muscle
15	chr22:28639600-28644000	Enhancers	NH-A	brain
16	chr22:28639800-28643000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr22:28639800-28643000	Weak transcription	Gastric	stomach
18	chr22:28639800-28643000	Weak transcription	Left Ventricle	heart
19	chr22:28639800-28643200	Weak transcription	Right Ventricle	heart
20	chr22:28640200-28642000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr22:28640200-28642000	Enhancers	Brain Substantia Nigra	brain
22	chr22:28640200-28642200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr22:28640600-28642400	Enhancers	Fetal Intestine Large	intestine
24	chr22:28640800-28642000	Enhancers	Liver	Liver
25	chr22:28640800-28642000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr22:28640800-28642000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr22:28640800-28642600	Enhancers	A549	lung
28	chr22:28640800-28643400	Enhancers	HSMMtube	muscle
29	chr22:28640800-28644000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr22:28640800-28644200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr22:28640800-28646200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr22:28641000-28642400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr22:28641000-28642800	Weak transcription	Brain Anterior Caudate	brain
34	chr22:28641000-28642800	Enhancers	HepG2	liver
35	chr22:28641000-28643200	Weak transcription	Brain Angular Gyrus	brain
36	chr22:28641000-28643200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr22:28641000-28643200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr22:28641000-28643800	Weak transcription	Right Atrium	heart
39	chr22:28641000-28644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr22:28641000-28645600	Weak transcription	Aorta	Aorta
41	chr22:28641000-28646800	Weak transcription	Small Intestine	intestine
42	chr22:28641000-28655800	Weak transcription	Fetal Kidney	kidney
43	chr22:28641200-28642400	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr22:28641200-28648400	Weak transcription	Fetal Brain Male	brain
45	chr22:28641400-28643000	Weak transcription	Brain Hippocampus Middle	brain
46	chr22:28641400-28643400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr22:28641400-28643600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr22:28641400-28644000	Enhancers	NHLF	lung
49	chr22:28641400-28644200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr22:28641600-28642000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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