Variant report
| Variant | rs71325276 |
|---|---|
| Chromosome Location | chr22:28594249-28594250 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13054508 | 0.89[AFR][1000 genomes] |
| rs13054964 | 0.88[EUR][1000 genomes] |
| rs13055218 | 0.88[EUR][1000 genomes] |
| rs13055409 | 0.95[EUR][1000 genomes] |
| rs13057007 | 0.93[EUR][1000 genomes] |
| rs13057353 | 0.88[EUR][1000 genomes] |
| rs13057948 | 0.90[EUR][1000 genomes] |
| rs13058493 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs16986197 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs2142917 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs28360522 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34013124 | 0.90[EUR][1000 genomes] |
| rs34189918 | 0.93[EUR][1000 genomes] |
| rs34364992 | 0.93[EUR][1000 genomes] |
| rs34625726 | 0.93[EUR][1000 genomes] |
| rs34783791 | 0.91[AFR][1000 genomes] |
| rs34946887 | 0.81[EUR][1000 genomes] |
| rs35098100 | 0.90[EUR][1000 genomes] |
| rs35286067 | 1.00[EUR][1000 genomes] |
| rs35568348 | 0.81[EUR][1000 genomes] |
| rs35649017 | 0.88[EUR][1000 genomes] |
| rs35738822 | 0.81[AMR][1000 genomes] |
| rs35906248 | 0.88[EUR][1000 genomes] |
| rs71325269 | 0.86[EUR][1000 genomes] |
| rs71325273 | 0.88[EUR][1000 genomes] |
| rs71325275 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs736531 | 0.81[EUR][1000 genomes] |
| rs767919 | 0.93[EUR][1000 genomes] |
| rs8141981 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs910009 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062877 | chr22:28163507-28866350 | Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv459866 | chr22:28540492-28753833 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv588879 | chr22:28540492-28753833 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:28572200-28597800 | Weak transcription | Dnd41 | blood |
| 2 | chr22:28577000-28603600 | Weak transcription | Aorta | Aorta |
| 3 | chr22:28577800-28600400 | Weak transcription | Right Atrium | heart |
