Variant report

Variant	rs736531
Chromosome Location	chr22:28417347-28417348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PITPNB-6	chr22:28416309-28419341	NONHSAT084646

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13054964	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13055218	0.93[EUR][1000 genomes]
rs13055244	1.00[AMR][1000 genomes]
rs13055409	0.86[EUR][1000 genomes]
rs13055548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13057007	0.88[EUR][1000 genomes]
rs13057353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13057948	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13058493	0.93[EUR][1000 genomes]
rs28360522	0.88[EUR][1000 genomes]
rs34013124	0.90[EUR][1000 genomes]
rs34031771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34189918	0.88[EUR][1000 genomes]
rs34364992	0.88[EUR][1000 genomes]
rs34625726	0.88[EUR][1000 genomes]
rs34946887	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35098100	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35182834	1.00[AMR][1000 genomes]
rs35286067	0.81[EUR][1000 genomes]
rs35568348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35568804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35649017	0.93[EUR][1000 genomes]
rs35750499	0.87[AMR][1000 genomes]
rs35906248	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36060887	0.87[AMR][1000 genomes]
rs71325264	1.00[AMR][1000 genomes]
rs71325266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71325269	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71325273	0.93[EUR][1000 genomes]
rs71325275	0.81[EUR][1000 genomes]
rs71325276	0.81[EUR][1000 genomes]
rs767919	0.88[EUR][1000 genomes]
rs8141981	0.86[EUR][1000 genomes]
rs910009	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28396000-28422400	Weak transcription	Primary T cells from cord blood	blood
2	chr22:28397200-28423000	Weak transcription	HepG2	liver
3	chr22:28399400-28425800	Weak transcription	Liver	Liver
4	chr22:28409000-28428000	Genic enhancers	Fetal Muscle Leg	muscle
5	chr22:28409400-28430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr22:28410200-28423000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr22:28410200-28423400	Weak transcription	Gastric	stomach
8	chr22:28410400-28424200	Weak transcription	Aorta	Aorta
9	chr22:28411000-28423600	Weak transcription	Fetal Intestine Large	intestine
10	chr22:28411800-28418200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr22:28411800-28418400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr22:28412000-28418200	Enhancers	Right Ventricle	heart
13	chr22:28412400-28423000	Weak transcription	Adipose Nuclei	Adipose
14	chr22:28414200-28417600	Enhancers	Esophagus	oesophagus
15	chr22:28414400-28418600	Genic enhancers	Dnd41	blood
16	chr22:28414800-28417400	Enhancers	HSMMtube	muscle
17	chr22:28415000-28418600	Enhancers	Fetal Thymus	thymus
18	chr22:28415200-28417800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr22:28415600-28417400	Enhancers	Brain Germinal Matrix	brain
20	chr22:28415600-28418200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr22:28415600-28418400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr22:28415800-28417400	Enhancers	Brain Hippocampus Middle	brain
23	chr22:28415800-28418400	Enhancers	Fetal Brain Male	brain
24	chr22:28415800-28418600	Enhancers	Placenta	Placenta
25	chr22:28416000-28417400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr22:28416000-28417600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr22:28416000-28417800	Enhancers	Ovary	ovary
28	chr22:28416000-28418600	Genic enhancers	Fetal Stomach	stomach
29	chr22:28416000-28425000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr22:28416200-28417400	Enhancers	Fetal Heart	heart
31	chr22:28416200-28417400	Enhancers	NHLF	lung
32	chr22:28416200-28417600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr22:28416200-28417800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr22:28416200-28417800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr22:28416200-28417800	Enhancers	Fetal Lung	lung
36	chr22:28416400-28417400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr22:28416400-28417400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr22:28416400-28417800	Enhancers	Right Atrium	heart
39	chr22:28416400-28418200	Enhancers	Fetal Brain Female	brain
40	chr22:28416400-28418400	Enhancers	Lung	lung
41	chr22:28416400-28421600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr22:28416600-28417400	Enhancers	Colon Smooth Muscle	Colon
43	chr22:28416600-28417600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr22:28416600-28418200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr22:28416600-28418800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr22:28416600-28422000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr22:28416600-28431000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr22:28416800-28417400	Enhancers	Brain Cingulate Gyrus	brain
49	chr22:28416800-28417400	Enhancers	HSMM	muscle
50	chr22:28416800-28417600	Enhancers	HUES6 Cell Line	embryonic stem cell

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