Variant report

Variant	rs35568804
Chromosome Location	chr22:28297072-28297073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:28288104..28290281-chr22:28296485..28298916,2	K562	blood:
2	chr22:28295306..28297742-chr22:28307525..28310849,3	MCF-7	breast:
3	chr22:28296920..28299668-chr22:28312010..28313621,2	K562	blood:
4	chr22:28296490..28297994-chr22:28315052..28317693,3	MCF-7	breast:
5	chr22:28296852..28298965-chr22:28300379..28302947,2	K562	blood:
6	chr22:28288104..28290281-chr22:28295657..28298916,3	K562	blood:

Variant related genes	Relation type
ENSG00000264073	Chromatin interaction
ENSG00000235954	Chromatin interaction
ENSG00000180957	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13054964	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13055218	0.81[EUR][1000 genomes]
rs13055244	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13055548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13057007	0.81[EUR][1000 genomes]
rs13057353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13057948	1.00[AMR][1000 genomes]
rs13058493	0.81[EUR][1000 genomes]
rs28360522	0.81[EUR][1000 genomes]
rs34031771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34189918	0.81[EUR][1000 genomes]
rs34364992	0.81[EUR][1000 genomes]
rs34625726	0.81[EUR][1000 genomes]
rs34946887	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35098100	1.00[AMR][1000 genomes]
rs35182834	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35568348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35649017	0.81[EUR][1000 genomes]
rs35750499	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35906248	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36060887	0.87[AMR][1000 genomes]
rs41281591	0.93[EUR][1000 genomes]
rs71325264	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71325266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71325269	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71325273	0.81[EUR][1000 genomes]
rs736531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs767919	0.81[EUR][1000 genomes]
rs910009	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv588878	chr22:28248840-28314113	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28247000-28311800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:28277200-28308600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr22:28277400-28300600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr22:28277800-28308400	Strong transcription	Dnd41	blood
5	chr22:28278400-28298800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr22:28278400-28299000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr22:28278600-28299000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr22:28278600-28299600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr22:28278600-28299800	Strong transcription	Primary T cells from cord blood	blood
10	chr22:28278600-28300600	Strong transcription	Fetal Muscle Leg	muscle
11	chr22:28279000-28299600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr22:28279000-28300000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:28279400-28298400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr22:28279600-28298400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr22:28279600-28298600	Strong transcription	Primary B cells from cord blood	blood
16	chr22:28279600-28299000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr22:28280600-28308000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr22:28281600-28298600	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr22:28281600-28308000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr22:28283000-28307000	Strong transcription	Fetal Intestine Large	intestine
21	chr22:28283200-28298800	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr22:28283200-28300000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr22:28283200-28307600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr22:28283400-28298400	Strong transcription	HMEC	breast
25	chr22:28283600-28300400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr22:28283600-28310000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr22:28283800-28298400	Strong transcription	Duodenum Mucosa	Duodenum
28	chr22:28283800-28298600	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr22:28283800-28298800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr22:28283800-28299600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr22:28283800-28304200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr22:28283800-28304200	Strong transcription	Fetal Thymus	thymus
33	chr22:28283800-28308000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr22:28284000-28299000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr22:28284000-28299200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr22:28284000-28300600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr22:28284200-28300000	Strong transcription	NHDF-Ad	bronchial
38	chr22:28284800-28298400	Strong transcription	Osteobl	bone
39	chr22:28285000-28301800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr22:28285800-28298800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr22:28286000-28298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr22:28286000-28309000	Weak transcription	Stomach Mucosa	stomach
43	chr22:28286200-28311400	Weak transcription	Right Atrium	heart
44	chr22:28288400-28300000	Weak transcription	Small Intestine	intestine
45	chr22:28288600-28309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr22:28289000-28300400	Strong transcription	Placenta	Placenta
47	chr22:28289000-28312600	Weak transcription	Psoas Muscle	Psoas
48	chr22:28289400-28300600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr22:28289800-28299800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr22:28292000-28305800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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