Variant report

Variant	rs35182834
Chromosome Location	chr22:28312528-28312529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr22:28312379-28312713	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr22:28312117-28312680	MCF10A-Er-Src	breast:	n/a	chr22:28312212-28312223 chr22:28312251-28312263
3	FOS	chr22:28312097-28312581	MCF10A-Er-Src	breast:	n/a	chr22:28312212-28312223 chr22:28312251-28312263
4	POLR2A	chr22:28312342-28312543	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr22:28312404-28312681	MCF10A-Er-Src	breast:	n/a	n/a
6	JUND	chr22:28312458-28312602	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28309562..28313647-chr22:28313905..28316499,4	MCF-7	breast:
2	chr22:28296920..28299668-chr22:28312010..28313621,2	K562	blood:

Variant related genes	Relation type
TTC28-AS1	TF binding region
ENSG00000180957	Chromatin interaction
ENSG00000235954	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13055244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13055409	0.81[EUR][1000 genomes]
rs13055548	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13057007	0.83[EUR][1000 genomes]
rs13057353	1.00[AMR][1000 genomes]
rs13057948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28360522	0.83[EUR][1000 genomes]
rs34013124	0.81[EUR][1000 genomes]
rs34031771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34189918	0.83[EUR][1000 genomes]
rs34364992	0.83[EUR][1000 genomes]
rs34625726	0.83[EUR][1000 genomes]
rs34946887	0.90[EUR][1000 genomes]
rs35098100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35568348	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35568804	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35750499	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35866626	1.00[AFR][1000 genomes]
rs35906248	1.00[AMR][1000 genomes]
rs36060887	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41281591	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs71325264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71325266	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71325268	1.00[AFR][1000 genomes]
rs71325269	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71325272	1.00[AFR][1000 genomes]
rs736531	1.00[AMR][1000 genomes]
rs767919	0.83[EUR][1000 genomes]
rs8141981	0.81[EUR][1000 genomes]
rs910009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv588878	chr22:28248840-28314113	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28289000-28312600	Weak transcription	Psoas Muscle	Psoas
2	chr22:28295200-28313800	Weak transcription	Colonic Mucosa	Colon
3	chr22:28298400-28314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:28299200-28314000	Weak transcription	Spleen	Spleen
5	chr22:28303800-28313000	Weak transcription	Fetal Brain Female	brain
6	chr22:28303800-28313200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr22:28304000-28313200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr22:28304200-28313000	Weak transcription	Fetal Brain Male	brain
9	chr22:28306400-28313800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr22:28306400-28313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr22:28306400-28314200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr22:28306400-28314400	Weak transcription	Esophagus	oesophagus
13	chr22:28306600-28313800	Weak transcription	Lung	lung
14	chr22:28307000-28313000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr22:28307000-28313800	Weak transcription	Fetal Thymus	thymus
16	chr22:28307200-28313600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr22:28307200-28313800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr22:28307200-28313800	Weak transcription	Placenta	Placenta
19	chr22:28307600-28313000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr22:28307600-28313400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr22:28308000-28313800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr22:28308000-28314000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr22:28308200-28313800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr22:28309200-28313600	Enhancers	HepG2	liver
25	chr22:28309800-28313200	Weak transcription	Brain Angular Gyrus	brain
26	chr22:28309800-28313600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr22:28309800-28313600	Weak transcription	Thymus	Thymus
28	chr22:28309800-28313800	Enhancers	Liver	Liver
29	chr22:28309800-28313800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr22:28310000-28313000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr22:28310000-28313000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr22:28310000-28313200	Weak transcription	Aorta	Aorta
33	chr22:28310000-28313200	Weak transcription	Brain Substantia Nigra	brain
34	chr22:28310000-28313200	Weak transcription	Stomach Mucosa	stomach
35	chr22:28310000-28313200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr22:28310000-28313200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr22:28310000-28313200	Weak transcription	NH-A	brain
38	chr22:28310000-28313600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr22:28310000-28313600	Weak transcription	Brain Anterior Caudate	brain
40	chr22:28310000-28313600	Weak transcription	Right Ventricle	heart
41	chr22:28310000-28313800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr22:28310000-28313800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr22:28310000-28313800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr22:28310000-28313800	Weak transcription	Left Ventricle	heart
45	chr22:28310000-28313800	Weak transcription	Pancreas	Pancrea
46	chr22:28310000-28313800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr22:28310200-28313000	Weak transcription	A549	lung
48	chr22:28310200-28313200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr22:28310200-28313200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr22:28310200-28313400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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