Variant report

Variant	rs41281591
Chromosome Location	chr22:28317217-28317218
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28314687..28317374-chr22:28386537..28389209,3	MCF-7	breast:
2	chr22:28317023..28318646-chr22:28319576..28321605,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235954	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13055244	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13055409	0.81[EUR][1000 genomes]
rs13055548	0.93[EUR][1000 genomes]
rs13057007	0.83[EUR][1000 genomes]
rs13057948	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28360522	0.83[EUR][1000 genomes]
rs34013124	0.81[EUR][1000 genomes]
rs34031771	0.93[EUR][1000 genomes]
rs34189918	0.83[EUR][1000 genomes]
rs34364992	0.83[EUR][1000 genomes]
rs34625726	0.83[EUR][1000 genomes]
rs34946887	0.90[EUR][1000 genomes]
rs35098100	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35182834	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35568348	0.90[EUR][1000 genomes]
rs35568804	0.93[EUR][1000 genomes]
rs35750499	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35866626	1.00[AFR][1000 genomes]
rs36060887	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71325264	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71325266	0.93[EUR][1000 genomes]
rs71325268	1.00[AFR][1000 genomes]
rs71325269	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs71325272	1.00[AFR][1000 genomes]
rs767919	0.83[EUR][1000 genomes]
rs8141981	0.81[EUR][1000 genomes]
rs910009	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316000-28317800	Enhancers	Small Intestine	intestine
2	chr22:28316200-28326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:28316200-28328400	Weak transcription	Aorta	Aorta
4	chr22:28316200-28337400	Weak transcription	Ovary	ovary
5	chr22:28316400-28317400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr22:28316400-28317400	Enhancers	Fetal Stomach	stomach
7	chr22:28316400-28317600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr22:28316400-28317600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr22:28316400-28317600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr22:28316400-28317800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr22:28316400-28317800	Enhancers	Fetal Heart	heart
12	chr22:28316400-28318000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr22:28316400-28319400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr22:28316400-28320400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr22:28316400-28321400	Weak transcription	Spleen	Spleen
16	chr22:28316400-28322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr22:28316400-28322400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr22:28316400-28322600	Weak transcription	HSMMtube	muscle
19	chr22:28316400-28326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr22:28316400-28326400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr22:28316400-28326400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr22:28316400-28326400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr22:28316400-28326600	Weak transcription	Right Ventricle	heart
24	chr22:28316400-28327000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr22:28316400-28328200	Weak transcription	Left Ventricle	heart
26	chr22:28316400-28329000	Weak transcription	Pancreas	Pancrea
27	chr22:28316400-28329000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr22:28316400-28335000	Weak transcription	Colonic Mucosa	Colon
29	chr22:28316400-28336800	Weak transcription	Fetal Muscle Leg	muscle
30	chr22:28316400-28342600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr22:28316400-28358600	Weak transcription	Placenta	Placenta
32	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
35	chr22:28316600-28317600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr22:28316600-28317600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr22:28316600-28317600	Enhancers	Thymus	Thymus
38	chr22:28316600-28318000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr22:28316600-28319200	Weak transcription	Fetal Thymus	thymus
40	chr22:28316600-28320000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr22:28316600-28323200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr22:28316600-28325400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr22:28316600-28328600	Weak transcription	Stomach Mucosa	stomach
44	chr22:28316600-28348400	Weak transcription	Brain Substantia Nigra	brain
45	chr22:28316800-28317400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr22:28316800-28317400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr22:28316800-28317400	Enhancers	Fetal Kidney	kidney
48	chr22:28316800-28317400	Enhancers	HSMM	muscle
49	chr22:28316800-28317600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr22:28316800-28317600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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