Variant report

Variant	rs35866626
Chromosome Location	chr22:28299705-28299706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13055244	1.00[AFR][1000 genomes]
rs13057948	1.00[AFR][1000 genomes]
rs35098100	1.00[AFR][1000 genomes]
rs35182834	1.00[AFR][1000 genomes]
rs35750499	1.00[AFR][1000 genomes]
rs36060887	1.00[AFR][1000 genomes]
rs41281591	1.00[AFR][1000 genomes]
rs71325264	1.00[AFR][1000 genomes]
rs71325265	1.00[AMR][1000 genomes]
rs71325268	1.00[AFR][1000 genomes]
rs71325269	1.00[AFR][1000 genomes]
rs71325272	1.00[AFR][1000 genomes]
rs910009	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv588878	chr22:28248840-28314113	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28247000-28311800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:28277200-28308600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr22:28277400-28300600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr22:28277800-28308400	Strong transcription	Dnd41	blood
5	chr22:28278600-28299800	Strong transcription	Primary T cells from cord blood	blood
6	chr22:28278600-28300600	Strong transcription	Fetal Muscle Leg	muscle
7	chr22:28279000-28300000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:28280600-28308000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:28281600-28308000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr22:28283000-28307000	Strong transcription	Fetal Intestine Large	intestine
11	chr22:28283200-28300000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr22:28283200-28307600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr22:28283600-28300400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr22:28283600-28310000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr22:28283800-28304200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr22:28283800-28304200	Strong transcription	Fetal Thymus	thymus
17	chr22:28283800-28308000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr22:28284000-28300600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr22:28284200-28300000	Strong transcription	NHDF-Ad	bronchial
20	chr22:28285000-28301800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:28286000-28309000	Weak transcription	Stomach Mucosa	stomach
22	chr22:28286200-28311400	Weak transcription	Right Atrium	heart
23	chr22:28288400-28300000	Weak transcription	Small Intestine	intestine
24	chr22:28288600-28309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr22:28289000-28300400	Strong transcription	Placenta	Placenta
26	chr22:28289000-28312600	Weak transcription	Psoas Muscle	Psoas
27	chr22:28289400-28300600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr22:28289800-28299800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr22:28292000-28305800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr22:28292400-28303200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr22:28292600-28307800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr22:28292800-28302800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr22:28292800-28306000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr22:28292800-28307200	Strong transcription	Liver	Liver
35	chr22:28292800-28309200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr22:28293000-28305600	Weak transcription	Brain Hippocampus Middle	brain
37	chr22:28293200-28306000	Weak transcription	Brain Anterior Caudate	brain
38	chr22:28293200-28309000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr22:28293400-28306600	Weak transcription	Hela-S3	cervix
40	chr22:28293800-28299800	Weak transcription	A549	lung
41	chr22:28293800-28300000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr22:28293800-28300000	Weak transcription	Fetal Brain Female	brain
43	chr22:28293800-28309200	Weak transcription	Brain Substantia Nigra	brain
44	chr22:28293800-28309600	Weak transcription	Right Ventricle	heart
45	chr22:28293800-28311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr22:28294000-28300000	Weak transcription	Fetal Heart	heart
47	chr22:28294000-28302000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr22:28294000-28302600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr22:28294000-28302600	Weak transcription	HSMMtube	muscle
50	chr22:28294000-28303200	Weak transcription	Esophagus	oesophagus

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