Variant report

Variant	rs13055218
Chromosome Location	chr22:28452682-28452683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13054964	1.00[EUR][1000 genomes]
rs13055244	0.81[EUR][1000 genomes]
rs13055409	0.93[EUR][1000 genomes]
rs13055548	0.81[EUR][1000 genomes]
rs13057007	0.95[EUR][1000 genomes]
rs13057353	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13057948	0.98[EUR][1000 genomes]
rs13058493	1.00[EUR][1000 genomes]
rs28360522	0.95[EUR][1000 genomes]
rs34013124	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34031771	0.81[EUR][1000 genomes]
rs34189918	0.95[EUR][1000 genomes]
rs34364992	0.95[EUR][1000 genomes]
rs34625726	0.95[EUR][1000 genomes]
rs34946887	0.88[EUR][1000 genomes]
rs35098100	0.98[EUR][1000 genomes]
rs35286067	0.88[EUR][1000 genomes]
rs35568348	0.88[EUR][1000 genomes]
rs35568804	0.81[EUR][1000 genomes]
rs35649017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35906248	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36060887	0.80[EUR][1000 genomes]
rs71325266	0.81[EUR][1000 genomes]
rs71325269	0.88[EUR][1000 genomes]
rs71325273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71325275	0.88[EUR][1000 genomes]
rs71325276	0.88[EUR][1000 genomes]
rs736531	0.93[EUR][1000 genomes]
rs767919	0.95[EUR][1000 genomes]
rs8141981	0.93[EUR][1000 genomes]
rs910009	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28431200-28459600	Weak transcription	Aorta	Aorta
2	chr22:28432000-28469000	Weak transcription	Primary T cells from cord blood	blood
3	chr22:28443800-28459200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr22:28444400-28458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr22:28445200-28462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr22:28445200-28470400	Weak transcription	Pancreas	Pancrea
7	chr22:28445400-28459200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr22:28445400-28470800	Weak transcription	Lung	lung
9	chr22:28445800-28462800	Weak transcription	Left Ventricle	heart
10	chr22:28446200-28458000	Weak transcription	Fetal Intestine Small	intestine
11	chr22:28446200-28467800	Weak transcription	Fetal Muscle Leg	muscle
12	chr22:28446400-28454000	Weak transcription	Dnd41	blood
13	chr22:28448400-28458000	Weak transcription	Fetal Stomach	stomach
14	chr22:28449200-28454000	Weak transcription	Fetal Lung	lung
15	chr22:28449400-28459400	Weak transcription	Fetal Brain Female	brain
16	chr22:28449600-28458600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr22:28449600-28479200	Weak transcription	Brain Germinal Matrix	brain
18	chr22:28449600-28488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr22:28450000-28471400	Weak transcription	Colon Smooth Muscle	Colon
20	chr22:28450200-28459200	Weak transcription	Adipose Nuclei	Adipose
21	chr22:28450400-28461000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr22:28450400-28464800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr22:28450400-28468200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr22:28450600-28461000	Weak transcription	Ovary	ovary
25	chr22:28450600-28468000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr22:28450600-28468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr22:28450800-28452800	Weak transcription	HUVEC	blood vessel
28	chr22:28450800-28462800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links