Variant report

Variant	rs35286067
Chromosome Location	chr22:28567361-28567362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13054964	0.88[EUR][1000 genomes]
rs13055218	0.88[EUR][1000 genomes]
rs13055409	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13057007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13057353	0.88[EUR][1000 genomes]
rs13057948	0.90[EUR][1000 genomes]
rs13058493	0.88[EUR][1000 genomes]
rs135642	0.82[AFR][1000 genomes]
rs28360522	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34013124	0.90[EUR][1000 genomes]
rs34189918	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34364992	0.93[EUR][1000 genomes]
rs34625726	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34946887	0.81[EUR][1000 genomes]
rs35098100	0.90[EUR][1000 genomes]
rs35568348	0.81[EUR][1000 genomes]
rs35649017	0.88[EUR][1000 genomes]
rs35906248	0.88[EUR][1000 genomes]
rs71325269	0.86[EUR][1000 genomes]
rs71325273	0.88[EUR][1000 genomes]
rs71325275	1.00[EUR][1000 genomes]
rs71325276	1.00[EUR][1000 genomes]
rs736531	0.81[EUR][1000 genomes]
rs767919	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8141981	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs910009	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28540200-28567800	Weak transcription	Gastric	stomach
2	chr22:28540800-28567800	Weak transcription	Small Intestine	intestine
3	chr22:28543400-28568800	Weak transcription	NHDF-Ad	bronchial
4	chr22:28557600-28567800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr22:28559600-28567600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:28559600-28567800	Weak transcription	Ovary	ovary
7	chr22:28559800-28577400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr22:28565800-28567800	Weak transcription	Fetal Kidney	kidney
9	chr22:28565800-28567800	Weak transcription	Fetal Muscle Leg	muscle
10	chr22:28566400-28568800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr22:28566600-28568200	Enhancers	Brain Anterior Caudate	brain
12	chr22:28566600-28568400	Enhancers	Brain Hippocampus Middle	brain
13	chr22:28566600-28569000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr22:28566600-28569400	Enhancers	Colon Smooth Muscle	Colon
15	chr22:28566600-28569600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr22:28566600-28569600	Enhancers	Fetal Stomach	stomach
17	chr22:28566600-28570200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr22:28566800-28568200	Enhancers	Left Ventricle	heart
19	chr22:28566800-28568400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr22:28566800-28568400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr22:28566800-28569600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr22:28566800-28569800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr22:28566800-28571200	Enhancers	Dnd41	blood
24	chr22:28567000-28567400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr22:28567000-28567800	Weak transcription	Fetal Lung	lung
26	chr22:28567000-28568200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr22:28567000-28568200	Enhancers	Brain Cingulate Gyrus	brain
28	chr22:28567000-28568400	Enhancers	Brain Substantia Nigra	brain
29	chr22:28567000-28569800	Enhancers	Brain Germinal Matrix	brain
30	chr22:28567000-28577600	Weak transcription	Psoas Muscle	Psoas
31	chr22:28567200-28567400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr22:28567200-28567400	Enhancers	Rectal Smooth Muscle	rectum
33	chr22:28567200-28567800	Weak transcription	Fetal Brain Male	brain
34	chr22:28567200-28568400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr22:28567200-28568800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr22:28567200-28569200	Enhancers	Fetal Heart	heart
37	chr22:28567200-28569400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr22:28567200-28569800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr22:28567200-28570000	Enhancers	Adipose Nuclei	Adipose
40	chr22:28567200-28570000	Enhancers	NHEK	skin

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