Variant report

Variant	rs35719457
Chromosome Location	chr22:28780753-28780754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13053405	0.85[EUR][1000 genomes]
rs13054496	0.94[EUR][1000 genomes]
rs13054508	1.00[EUR][1000 genomes]
rs13055501	0.94[EUR][1000 genomes]
rs13055576	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13056425	0.82[EUR][1000 genomes]
rs13056776	0.85[EUR][1000 genomes]
rs13057685	0.85[EUR][1000 genomes]
rs13057692	0.88[EUR][1000 genomes]
rs13058473	0.82[EUR][1000 genomes]
rs34176007	0.82[EUR][1000 genomes]
rs34188840	0.85[EUR][1000 genomes]
rs34277219	0.85[EUR][1000 genomes]
rs34783791	0.82[EUR][1000 genomes]
rs34843903	0.91[EUR][1000 genomes]
rs34925495	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34928826	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34929472	0.91[EUR][1000 genomes]
rs34962554	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34970554	0.91[EUR][1000 genomes]
rs34994167	0.94[EUR][1000 genomes]
rs35230579	0.81[EUR][1000 genomes]
rs35286648	0.91[EUR][1000 genomes]
rs35507981	0.91[EUR][1000 genomes]
rs35812775	0.83[AMR][1000 genomes]
rs36100499	0.85[EUR][1000 genomes]
rs58433661	0.85[EUR][1000 genomes]
rs71325290	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71325299	0.91[EUR][1000 genomes]
rs71327305	0.81[EUR][1000 genomes]
rs7286202	0.94[EUR][1000 genomes]
rs8136113	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	esv3375925	chr22:28776038-28781986	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3358450	chr22:28776048-28781985	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28776000-28789000	Weak transcription	Dnd41	blood
2	chr22:28776800-28789600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr22:28777000-28789800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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